Browse Element(s) Details


OsAffx.13559.1.S1_at

Description tigr:9631.m05935
TID=OsAffx.13559.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g602798/11Cinnamoyl-CoA reductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60240OsAffx.13558.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed
LOC_Os03g60240Os.52328.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed
LOC_Os03g60250OsAffx.3653.1.S1_at11/113+34206776..34207432expressed protein
LOC_Os03g60260Os.50583.1.S1_at9/113+34210295..34212001Transmembrane amino acid transporter protein, expressed
LOC_Os03g60279OsAffx.13559.1.S1_at8/113+34222876..34227756Cinnamoyl-CoA reductase, putative
LOC_Os03g60300Os.57396.1.S1_at11/113+34228793..34231716expressed protein
LOC_Os03g60310OsAffx.3655.1.S1_at11/113+34237482..34239065hypothetical protein
LOC_Os03g60340Os.35919.1.S1_s_at11/113+34250092..34253736expressed protein
LOC_Os03g60340Os.10095.1.S1_at11/113+34250092..34253736expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13559.1.S1_at--1051--8631Chr03:34222872..34222896 (25 bp)
TGGGATGGCCGCCTGGCTTGCTGCG
NONE
OsAffx.13559.1.S1_at--50--4931Chr03:34222887..34222911 (25 bp)
GCTTGCTGCGCTGCTATGGCTAGTA
LOC_Os03g60279
OsAffx.13559.1.S1_at--1055--4771Chr03:34222891..34222915 (25 bp)
GCTGCGCTGCTATGGCTAGTAGCTG
LOC_Os03g60279
OsAffx.13559.1.S1_at--5--8491Chr03:34222903..34222927 (25 bp)
TGGCTAGTAGCTGCAGGATGCCTAG
LOC_Os03g60279
OsAffx.13559.1.S1_at--340--6971Chr03:34222909..34222933 (25 bp)
GTAGCTGCAGGATGCCTAGGTTCAG
LOC_Os03g60279
OsAffx.13559.1.S1_at--467--591NONE
ATGCCTAGGTTCAGGGCGTGCATAA
NONE
OsAffx.13559.1.S1_at--436--6731NONE
GTTCAGGGCGTGCATAAACTACGGT
NONE
OsAffx.13559.1.S1_at--227--7331Chr03:34225103..34225127 (25 bp)
GTGCATAAACTACGGTGAGTCCCAA
LOC_Os03g60279
OsAffx.13559.1.S1_at--274--2531Chr03:34225110..34225134 (25 bp)
AACTACGGTGAGTCCCAAGAAGAAG
LOC_Os03g60279
OsAffx.13559.1.S1_at--928--6031Chr03:34225137..34225161 (25 bp)
GAGATCAGGCGTGACAATATCGCAC
LOC_Os03g60279
OsAffx.13559.1.S1_at--738--6431Chr03:34225139..34225163 (25 bp)
GATCAGGCGTGACAATATCGCACGT
LOC_Os03g60279
Target Sequence 
TGGGATGGCCGCCTGGCTTGCTGCGCTGCTATGGCTAGTAGCTGCAGGATGCCTAGGTTCAGGGCGTGCATAAACTACGG
TGAGTCCCAAGAAGAAGAAGAGATCAGGCGTGACAATATCGCACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis