Browse Element(s) Details


OsAffx.3655.1.S1_at

Description tigr:9631.m05938
TID=OsAffx.3655.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6031011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60279OsAffx.13559.1.S1_at8/113+34222876..34227756Cinnamoyl-CoA reductase, putative
LOC_Os03g60300Os.57396.1.S1_at11/113+34228793..34231716expressed protein
LOC_Os03g60310OsAffx.3655.1.S1_at11/113+34237482..34239065hypothetical protein
LOC_Os03g60340Os.35919.1.S1_s_at11/113+34250092..34253736expressed protein
LOC_Os03g60340Os.10095.1.S1_at11/113+34250092..34253736expressed protein
LOC_Os03g60350Os.18891.1.S1_at10/113+34259168..34264315expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3655.1.S1_at--1070--971Chr03:34238329..34238353 (25 bp)
AGGAGACGTACCCTCGCGAGTGCCT
LOC_Os03g60310
OsAffx.3655.1.S1_at--604--6511Chr03:34238362..34238386 (25 bp)
GATATTTCCCGCATGGGCCGGCGAG
LOC_Os03g60310
OsAffx.3655.1.S1_at--602--5011Chr03:34238407..34238431 (25 bp)
GCAGGTTGTGCATCGGCTGGACCAT
LOC_Os03g60310
OsAffx.3655.1.S1_at--968--6051Chr03:34238439..34238463 (25 bp)
GAGTTCGGCGAGCAATACGGCTATT
LOC_Os03g60310
OsAffx.3655.1.S1_at--1040--9911Chr03:34238454..34238478 (25 bp)
TACGGCTATTCTAATATGCCCACGC
LOC_Os03g60310
OsAffx.3655.1.S1_at--359--5651Chr03:34238533..34238557 (25 bp)
GACAGCTGCGCCTTGTGAAGCACAA
LOC_Os03g60310
OsAffx.3655.1.S1_at--301--8691Chr03:34238546..34238570 (25 bp)
TGTGAAGCACAAGGCGCGCTGCTAC
LOC_Os03g60310
OsAffx.3655.1.S1_at--581--9071Chr03:34238565..34238589 (25 bp)
TGCTACCTCATGTCAAACCGAGCAC
LOC_Os03g60310
OsAffx.3655.1.S1_at--559--9511Chr03:34238819..34238841 (23 bp)
TTACGCCTAGTAGAACTCGACGGTG
LOC_Os03g60310
OsAffx.3655.1.S1_at--897--1291Chr03:34238864..34238888 (25 bp)
AGATGCTGAGCAAGTCCTGACCCCG
LOC_Os03g60310
OsAffx.3655.1.S1_at--899--5931Chr03:34238889..34238913 (25 bp)
GAGCAGCGAGTCTACTGCCCTAGGC
LOC_Os03g60310
Target Sequence 
AGGAGACGTACCCTCGCGAGTGCCTGGAGCGGGGATATTTCCCGCATGGGCCGGCGAGCCTGGCCTACCTGGGAGATGGC
AGGTTGTGCATCGGCTGGACCATCATCGTCGAGTTCGGCGAGCAATACGGCTATTCTAATATGCCCACGCGCTTCGCCCT
CCTCCTCATGGCTGTCCAAGTCGTCGCCGTCGCCGGAGAAGAAGGACAGCTGCGCCTTGTGAAGCACAAGGCGCGCTGCT
ACCTCATGTCAAACCGAGCACAAGAGATCTTCCTCCTCCAGCCCTCTTTACGCCTAGTAGAACTCGACGGTGGCGTCGTA
GTCCTTGGCCCTGAAGATGCTGAGCAAGTCCTGACCCCGGAGCAGCGAGTCTACTGCCCTAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis