Browse Element(s) Details


OsAffx.3652.1.S1_at

Description gb:AK107781.1
DB_XREF= gi:32992990
TID=OsAffx.3652.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-C07, full insert sequence.
FL= gb:AK107781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6021011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60170Os.56162.1.A1_x_at11/113+34158881..34161617expressed protein
LOC_Os03g60170Os.56162.1.A1_at11/113+34158881..34161617expressed protein
LOC_Os03g60170OsAffx.13557.1.S1_x_at5/113+34158881..34161617expressed protein
LOC_Os03g60180OsAffx.6045.1.S1_s_at11/113+34166462..34171067expressed protein
LOC_Os03g60180Os.54092.1.S1_at11/113+34166462..34171067expressed protein
LOC_Os03g60180OsAffx.6045.1.S1_at4/113+34166462..34171067expressed protein
LOC_Os03g60180OsAffx.13557.1.S1_x_at1/113+34166462..34171067expressed protein
LOC_Os03g60190Os.27965.1.S1_at11/113+34173380..34177340oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os03g60200Os.25194.1.S1_at9/113+34177408..34180577pentatricopeptide, putative, expressed
LOC_Os03g60210OsAffx.3652.1.S1_at11/113+34181098..34182353expressed protein
LOC_Os03g60220Os.53258.1.S1_at11/113+34184028..34185132expressed protein
LOC_Os03g60230OsAffx.19542.3.S1_x_at3/113+34187150..34191058retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g60240OsAffx.13558.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed
LOC_Os03g60240Os.52328.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed
LOC_Os03g60250OsAffx.3653.1.S1_at11/113+34206776..34207432expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3652.1.S1_at--234--691Chr03:34182035..34182059 (25 bp)
ATGACGGACTCGACCTACCTGATGA
LOC_Os03g60210
OsAffx.3652.1.S1_at--483--8871Chr03:34182016..34182040 (25 bp)
TGATGAGCTCGATGTGGCACGCCTT
LOC_Os03g60210
OsAffx.3652.1.S1_at--689--971Chr03:34181944..34181968 (25 bp)
AGGAGTCCGTCGTCCAGGTCAGGAC
LOC_Os03g60210
OsAffx.3652.1.S1_at--66--9091Chr03:34181351..34181811 (25 bp)
TGCTCAGATCACTCGTCCAAATTTG
LOC_Os03g60210
OsAffx.3652.1.S1_at--1089--10471Chr03:34181308..34181332 (25 bp)
TTGACGAGGTCTGTGTATACGGCTA
LOC_Os03g60210
OsAffx.3652.1.S1_at--390--6491Chr03:34181270..34181294 (25 bp)
GATAGACCAGGCGTTCATCCTGTCG
LOC_Os03g60210
OsAffx.3652.1.S1_at--63--571Chr03:34181254..34181278 (25 bp)
ATCCTGTCGCTCGTTGTGATTCTGC
LOC_Os03g60210
OsAffx.3652.1.S1_at--161--6571Chr03:34181237..34181261 (25 bp)
GATTCTGCACGAGATGCATCACTGC
LOC_Os03g60210
OsAffx.3652.1.S1_at--171--4971Chr03:34181222..34181246 (25 bp)
GCATCACTGCAACACTAGTAGTAGG
LOC_Os03g60210
OsAffx.3652.1.S1_at--42--7611Chr03:34181192..34181216 (25 bp)
GGGACTTTGAACTCTGAACTTGTGA
LOC_Os03g60210
OsAffx.3652.1.S1_at--1143--5471Chr03:34181177..34181201 (25 bp)
GAACTTGTGACATTTTTTCTTCTTT
LOC_Os03g60210
Target Sequence 
ATGACGGACTCGACCTACCTGATGAGCTCGATGTGGCACGCCTTCAGAGGGGACAGCACCAGCCGCCGGAGCGTCCTCTT
CAGCGTCGTCAAGGAGTCCGTCGTCCAGGTCAGGACCAAGATCTTCGTCTACCTCGGCGGCTACCGCTCCGCCGACCAGG
TCCCCGACTTCGTCATCGGCGGCAACTACTACGGCGGCGCATGCACTGTCTTCGCCGGCAACTCCGACTCCGACGCCGAC
GCCGCCATTGCTCAGATCACTCGTCCAAATTTGGCGGGTACATTGGTGGGATTGACGAGGTCTGTGTATACGGCTAGGAT
CAACCCGGGGATAGACCAGGCGTTCATCCTGTCGCTCGTTGTGATTCTGCACGAGATGCATCACTGCAACACTAGTAGTA
GGAATTGGGGACTTTGAACTCTGAACTTGTGACATTTTTTCTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis