Browse Element(s) Details


Os.56162.1.A1_x_at

Description gb:AK109509.1
DB_XREF= gi:32994718
TID=Os.56162.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-B06, full insert sequence.
FL= gb:AK109509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6017011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60130Os.37576.1.S1_at11/113+34134060..34136924transcription elongation factor S-II family protein, expressed
LOC_Os03g60140OsAffx.3651.1.S1_at9/113+34138016..34140761hypothetical protein
LOC_Os03g60150Os.9250.1.S1_at11/113+34141397..34145205Protein kinase domain containing protein, expressed
LOC_Os03g60170Os.56162.1.A1_x_at11/113+34158881..34161617expressed protein
LOC_Os03g60170Os.56162.1.A1_at11/113+34158881..34161617expressed protein
LOC_Os03g60170OsAffx.13557.1.S1_x_at5/113+34158881..34161617expressed protein
LOC_Os03g60180OsAffx.6045.1.S1_s_at11/113+34166462..34171067expressed protein
LOC_Os03g60180Os.54092.1.S1_at11/113+34166462..34171067expressed protein
LOC_Os03g60180OsAffx.6045.1.S1_at4/113+34166462..34171067expressed protein
LOC_Os03g60180OsAffx.13557.1.S1_x_at1/113+34166462..34171067expressed protein
LOC_Os03g60190Os.27965.1.S1_at11/113+34173380..34177340oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os03g60200Os.25194.1.S1_at9/113+34177408..34180577pentatricopeptide, putative, expressed
LOC_Os03g60210OsAffx.3652.1.S1_at11/113+34181098..34182353expressed protein
LOC_Os03g60220Os.53258.1.S1_at11/113+34184028..34185132expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56162.1.A1_x_at--540--3451Chr03:34159447..34159471 (25 bp)
CAGTAAACACATCTTGGCAGCCCAG
LOC_Os03g60170
Os.56162.1.A1_x_at--83--8211Chr03:34159337..34159361 (25 bp)
GGAAGGACTCGCTCTGAAACATCAA
LOC_Os03g60170
Os.56162.1.A1_x_at--43--1071Chr03:34159290..34159314 (25 bp)
AGGGTACTATTCTCGACATGCCGTT
LOC_Os03g60170
Os.56162.1.A1_x_at--236--8991Chr03:34159263..34159287 (25 bp)
TGAACCAGTTTCAGTCACCAGGGAA
LOC_Os03g60170
Os.56162.1.A1_x_at--86--2791Chr03:34159159..34159183 (25 bp)
AAGAGACTTCTCGATGGCGACAAGA
LOC_Os03g60170
Os.56162.1.A1_x_at--1053--5291Chr03:34159050..34159074 (25 bp)
GAAGGCACAGGTTTCTAGCATGCAG
LOC_Os03g60170
Os.56162.1.A1_x_at--474--6391Chr03:34159007..34159031 (25 bp)
GATCGTGTTGGTGATGTAATTTCTA
LOC_Os03g60170
Os.56162.1.A1_x_at--154--5691Chr03:34158973..34158997 (25 bp)
GACATTGACCTTTCCATAGTCTCTA
LOC_Os03g60170
Os.56162.1.A1_x_at--309--1151Chr03:34158956..34158980 (25 bp)
AGTCTCTACATGCTTAGGAGTTTGT
LOC_Os03g60170
Os.56162.1.A1_x_at--1011--7351Chr03:34158914..34158938 (25 bp)
GTGAAGAATTGTACTGCTCTCCCTT
LOC_Os03g60170
Os.56162.1.A1_x_at--1140--1972Chr03:27106206..27106525 (25 bp)
ACTGCTCTCCCTTTGTGAGATCAAA
NONE
Target Sequence 
CAGTAAACACATCTTGGCAGCCCAGCAAATTTGGCAAGCCAGGTATGGAAGAGTCTAGGAGAACACATAGTGGCAGATCC
ATCTATCTGAGAGACATCAAAGAATCACAGGGAAGGACTCGCTCTGAAACATCAAACAAATTACACATAAACAGTGCAGG
GTACTATTCTCGACATGCCGTTCCTGAACCAGTTTCAGTCACCAGGGAAATCAAAGTGCCGTTGTATGACAGTACAAGGG
CCTCTGGAAGAGATCGTGGACCAGAGCTAGTGGTGACAGGTCCACCAGAAGAGACTTCTCGATGGCGACAAGAACAATAC
GCACTTCAAATTTTAGAAGACGTGCAAAATGCTCGCGTTGCAGAGAAAACTAGGATGGAGATGGAGATCAGAATACTGAA
GGCACAGGTTTCTAGCATGCAGAGACAAGCGATGAACTTGGATCGTGTTGGTGATGTAATTTCTAGAGCAAAAAGACATT
GACCTTTCCATAGTCTCTACATGCTTAGGAGTTTGTTTCGTACCAAAATTTTGGTGAAGAATTGTACTGCTCTCCCTTTG
TGAGATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56162.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis