Browse Element(s) Details


OsAffx.3651.1.S1_at

Description tigr:9631.m05921
TID=OsAffx.3651.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g601409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60100Os.7864.1.S1_at11/113+34113713..3411562650S ribosomal protein L17, putative, expressed
LOC_Os03g60110Os.5675.1.S1_at11/113+34125371..34129755KH domain-containing protein, putative, expressed
LOC_Os03g60120Os.14299.1.S1_at11/113+34131362..34132584AP2 domain containing protein, expressed
LOC_Os03g60130Os.37576.1.S1_at11/113+34134060..34136924transcription elongation factor S-II family protein, expressed
LOC_Os03g60140OsAffx.3651.1.S1_at9/113+34138016..34140761hypothetical protein
LOC_Os03g60150Os.9250.1.S1_at11/113+34141397..34145205Protein kinase domain containing protein, expressed
LOC_Os03g60170Os.56162.1.A1_x_at11/113+34158881..34161617expressed protein
LOC_Os03g60170Os.56162.1.A1_at11/113+34158881..34161617expressed protein
LOC_Os03g60170OsAffx.13557.1.S1_x_at5/113+34158881..34161617expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3651.1.S1_at--1076--1551Chr03:34140048..34140072 (25 bp)
AGCTACTGGGACCTACTCAGAGCAC
LOC_Os03g60140
OsAffx.3651.1.S1_at--86--9511Chr03:34139661..34140044 (25 bp)
TCTCCGATCCGTTGACAGGTATACT
LOC_Os03g60140
OsAffx.3651.1.S1_at--440--6571Chr03:34139621..34139645 (25 bp)
GATTCTATCGTGTGGGCACTCTTAT
LOC_Os03g60140
OsAffx.3651.1.S1_at--231--7831Chr03:34139072..34139096 (25 bp)
GGTCAGCCAATTACCGAGGACTCTA
LOC_Os03g60140
OsAffx.3651.1.S1_at--179--951Chr03:34139057..34139080 (24 bp)
AGGACTCTATTCGACCAAACTTGGC
LOC_Os03g60140
OsAffx.3651.1.S1_at--1020--9291Chr03:34138554..34138578 (25 bp)
TCCGCCTTGCAGTTCAGGCATTTAA
LOC_Os03g60140
OsAffx.3651.1.S1_at--899--6831Chr03:34138318..34138342 (25 bp)
GTTTCCTTTTGCTGTCTTTGACCGA
LOC_Os03g60140
OsAffx.3651.1.S1_at--235--5811Chr03:34138175..34138199 (25 bp)
GACGCGTAGCAGTTGTGACAGCACA
LOC_Os03g60140
OsAffx.3651.1.S1_at--267--5351Chr03:34138018..34138042 (25 bp)
GAAGTTGCAATACCGTTCTCTGGCT
LOC_Os03g60140
OsAffx.3651.1.S1_at--828--1771Chr03:34138007..34138031 (25 bp)
ACCGTTCTCTGGCTAAGTTTACTGA
NONE
OsAffx.3651.1.S1_at--149--9791Chr03:34137994..34138018 (25 bp)
TAAGTTTACTGATGGCGGCCAGTCC
NONE
Target Sequence 
AGCTACTGGGACCTACTCAGAGCACACCTCTCCGATCCGTTGACAGGTATACTCATGGATGATGCAATGATTCTATCGTG
TGGGCACTCTTATGGAAGTAATGGAATGCAGCATATCTACAGAATGAAAGCTTGTGGCAAATGTGGTCAGCCAATTACCG
AGGACTCTATTCGACCAAACTTGGCTCTCCGCCTTGCAGTTCAGGCATTTAAACGCGAAGAAGAGTCAGCTAAATCTCTA
AAAAGAAGAAGAGAGCGCCTTGAGCAGGACAAATGTGGCAATGATGAACCAAATCCAACTGAGATTTCTAGAGGTAAAGG
TGTCCAGTTTCCTTTTGCTGTCTTTGACCGAGTCATAATCAAGGGCAACAAAAGGACCCCAGAACGATTTGTGGGACGCG
TAGCAGTTGTGACAGCACAGTGTCTAAATGGATGGTATGTGGTGAAGACCTTAGACAATGCAGAGAGTGTGAAGTTGCAA
TACCGTTCTCTGGCTAAGTTTACTGATGGCGGCCAGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis