Browse Element(s) Details


Os.5675.1.S1_at

Description gb:AK065405.1
DB_XREF= gi:32975423
TID=Os.5675.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013007I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013007I03, full insert sequence.
FL= gb:AK065405.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6011011/11KH domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60060NANA3+34099228..34100983transposon protein, putative, unclassified
LOC_Os03g60080Os.26695.1.S1_at11/113+34105034..34106478NAC-domain containing protein 19, putative, expressed
LOC_Os03g60090Os.7657.1.S1_at11/113+34106735..34112262Methylenetetrahydrofolate reductase, putative, expressed
LOC_Os03g60090OsAffx.17472.1.S1_at1/113+34106735..34112262Methylenetetrahydrofolate reductase, putative, expressed
LOC_Os03g60100Os.7864.1.S1_at11/113+34113713..3411562650S ribosomal protein L17, putative, expressed
LOC_Os03g60110Os.5675.1.S1_at11/113+34125371..34129755KH domain-containing protein, putative, expressed
LOC_Os03g60120Os.14299.1.S1_at11/113+34131362..34132584AP2 domain containing protein, expressed
LOC_Os03g60130Os.37576.1.S1_at11/113+34134060..34136924transcription elongation factor S-II family protein, expressed
LOC_Os03g60140OsAffx.3651.1.S1_at9/113+34138016..34140761hypothetical protein
LOC_Os03g60150Os.9250.1.S1_at11/113+34141397..34145205Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5675.1.S1_at--636--2991Chr03:34129110..34129134 (25 bp)
AATGCTAAACTCAACCCTGAGGGAG
LOC_Os03g60110
Os.5675.1.S1_at--1020--8631Chr03:34129149..34129173 (25 bp)
TGGGAGTGTCTCTCCATTCAGTAAT
LOC_Os03g60110
Os.5675.1.S1_at--312--8971Chr03:34129181..34129205 (25 bp)
TGAAACGCGCGAAAACGGGCCAGTA
LOC_Os03g60110
Os.5675.1.S1_at--88--1051Chr03:34129234..34129258 (25 bp)
AGGTGGTATCCAGGTGCCTTATGCC
LOC_Os03g60110
Os.5675.1.S1_at--321--31Chr03:34129274..34129298 (25 bp)
ATTGGCACACCTTCAGGCATTGTTT
LOC_Os03g60110
Os.5675.1.S1_at--331--3611Chr03:34129291..34129315 (25 bp)
CATTGTTTGCCATGGGTGTGTGTGA
LOC_Os03g60110
Os.5675.1.S1_at--90--671Chr03:34129324..34129348 (25 bp)
ATGCAATGCACCTTCACTAGATGGA
LOC_Os03g60110
Os.5675.1.S1_at--297--9651Chr03:34129357..34129381 (25 bp)
TCAGTCAGATTTTCGCCTTCAGGCA
LOC_Os03g60110
Os.5675.1.S1_at--531--7211Chr03:34129425..34129449 (25 bp)
GTCGATCCACCTTTGGTTTGTTGTA
LOC_Os03g60110
Os.5675.1.S1_at--416--5711Chr03:34129482..34129506 (25 bp)
GACTGTTAACCCTAGTATGTGGTGC
LOC_Os03g60110
Os.5675.1.S1_at--1004--7851Chr03:34129510..34129534 (25 bp)
GGTAGGTTATCTCCATGACAAGCTA
LOC_Os03g60110
Target Sequence 
AATGCTAAACTCAACCCTGAGGGAGGACAGCCCCCATCCTGGGAGTGTCTCTCCATTCAGTAATGGCGGTATGAAACGCG
CGAAAACGGGCCAGTAGAGAAGCNAACTNTACCACCACCCATTTGAGGTGGTATCCAGGTGCCTTATGCCCNTTAAAAAG
GATGGCATTGGCACACCTTCAGGCATTGTTTGCCATGGGTGTGTGTGAAGGAAGCAATGCAATGCACCTTCACTAGATGG
AGTTTGGTATCAGTCAGATTTTCGCCTTCAGGCAGGGGAAAACTTCAGGGACAATGACAATAGTCGCAGATCGTCCGGTC
GATCCACCTTTGGTTTGTTGTAAGGTCTCAAGAACATTTGTTTTATTTGTTATTGACTGTTAACCCTAGTATGTGGTGCT
ATGGTAGGTTATCTCCATGACAAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis