Browse Element(s) Details


Os.26695.1.S1_at

Description gb:AY596808.1
DB_XREF= gi:46849873
GEN=NAC
TID=Os.26695.1
CNT=55
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.26695 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) NAC transcription factor (NAC) mRNA, complete cds.
PROD=NAC transcription factor
FL= gb:AK104551.1 gb:AK104712.1 gb:AY596808.1 gb:AK067690.1 gb:AK099245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6008011/11NAC-domain containing protein 19, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60020Os.47463.1.S1_x_at6/113+34076279..34081459transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g60020Os.14491.2.S1_x_at4/113+34076279..34081459transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g60030NANA3+34081784..34084205transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g60050NANA3+34090307..34096975retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g60060NANA3+34099228..34100983transposon protein, putative, unclassified
LOC_Os03g60080Os.26695.1.S1_at11/113+34105034..34106478NAC-domain containing protein 19, putative, expressed
LOC_Os03g60090Os.7657.1.S1_at11/113+34106735..34112262Methylenetetrahydrofolate reductase, putative, expressed
LOC_Os03g60090OsAffx.17472.1.S1_at1/113+34106735..34112262Methylenetetrahydrofolate reductase, putative, expressed
LOC_Os03g60100Os.7864.1.S1_at11/113+34113713..3411562650S ribosomal protein L17, putative, expressed
LOC_Os03g60110Os.5675.1.S1_at11/113+34125371..34129755KH domain-containing protein, putative, expressed
LOC_Os03g60120Os.14299.1.S1_at11/113+34131362..34132584AP2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009744biological_processresponse to sucrose stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26695.1.S1_at--822--6091Chr03:34105866..34105890 (25 bp)
GAGTCGGAGATCGTGGACAACGACC
LOC_Os03g60080
Os.26695.1.S1_at--286--2491Chr03:34106025..34106049 (25 bp)
AACAGCAGCCTGTTCGTGGACCTGA
LOC_Os03g60080
Os.26695.1.S1_at--1090--6691Chr03:34106036..34106060 (25 bp)
GTTCGTGGACCTGAGCTACGACGAT
LOC_Os03g60080
Os.26695.1.S1_at--198--1471Chr03:34106049..34106073 (25 bp)
AGCTACGACGATATCCAGGGCATGT
LOC_Os03g60080
Os.26695.1.S1_at--770--251Chr03:34106059..34106083 (25 bp)
ATATCCAGGGCATGTACAGCGGCCT
LOC_Os03g60080
Os.26695.1.S1_at--240--3951Chr03:34106168..34106192 (25 bp)
CGGCATGGGCATGGTCCCGTTCTGA
LOC_Os03g60080
Os.26695.1.S1_at--872--5491Chr03:34106211..34106235 (25 bp)
GAACAGGTGGTGATCGATGCTGCAA
LOC_Os03g60080
Os.26695.1.S1_at--1058--512Chr03:34106223..34106247 (25 bp)
ATCGATGCTGCAACGTGTGTAAATA
LOC_Os03g60080
Os.26695.1.S1_at--1015--8671Chr03:34106238..34106262 (25 bp)
TGTGTAAATATACAGCGCCGGCTGG
LOC_Os03g60080
Os.26695.1.S1_at--152--6931Chr03:34106376..34106400 (25 bp)
GTATGTAGCTCTGTTTCTCTCTATA
LOC_Os03g60080
Os.26695.1.S1_at--1137--6831Chr03:34106388..34106412 (25 bp)
GTTTCTCTCTATAGAACCCCAACAA
LOC_Os03g60080
Target Sequence 
GAGTCGGAGATCGTGGACAACGACCCCTTCCCGGAGCTGGACTCGTTCCCGGCGTTCCAGCCTGCGCCGCCGCCGGCGAC
GGCGATGATGGTGCCCAAGAAAGAATCGATGGACGACGCCACCGCGGCCGCCGCCGCCGCCGCCACCATCCCCAGGAACA
ACAGCAGCCTGTTCGTGGACCTGAGCTACGACGATATCCAGGGCATGTACAGCGGCCTCGACATGCTGCCGCCGGGCGAC
GACTTCTACTCGTCGCTCTTCGCGTCGCCGCGGGTGAAGGGGACGACGCCACGCGCCGGCGCCGGCATGGGCATGGTCCC
GTTCTGAGGTGACGGCGACGCGATCGAACAGGTGGTGATCGATGCTGCAACGTGTGTAAATATACAGCGCCGGCTGGGTC
AAGAGATGGCTCGGGTGACGCGCGCGCGGCGTGTCCTGGCGTTGGCGCCGGGGCATTCTTTAGTTTTTCATCTTTTCATC
ATCTCAGATGGTAGATACAAAACAGTGTATGTATGTAGCTCTGTTTCTCTCTATAGAACCCCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis