Browse Element(s) Details


Os.27965.1.S1_at

Description gb:AK099739.1
DB_XREF= gi:32984948
TID=Os.27965.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090P21, full insert sequence.
FL= gb:AK099739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6019011/11oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60170Os.56162.1.A1_x_at11/113+34158881..34161617expressed protein
LOC_Os03g60170Os.56162.1.A1_at11/113+34158881..34161617expressed protein
LOC_Os03g60170OsAffx.13557.1.S1_x_at5/113+34158881..34161617expressed protein
LOC_Os03g60180OsAffx.6045.1.S1_s_at11/113+34166462..34171067expressed protein
LOC_Os03g60180Os.54092.1.S1_at11/113+34166462..34171067expressed protein
LOC_Os03g60180OsAffx.6045.1.S1_at4/113+34166462..34171067expressed protein
LOC_Os03g60180OsAffx.13557.1.S1_x_at1/113+34166462..34171067expressed protein
LOC_Os03g60190Os.27965.1.S1_at11/113+34173380..34177340oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os03g60200Os.25194.1.S1_at9/113+34177408..34180577pentatricopeptide, putative, expressed
LOC_Os03g60210OsAffx.3652.1.S1_at11/113+34181098..34182353expressed protein
LOC_Os03g60220Os.53258.1.S1_at11/113+34184028..34185132expressed protein
LOC_Os03g60230OsAffx.19542.3.S1_x_at3/113+34187150..34191058retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g60240OsAffx.13558.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed
LOC_Os03g60240Os.52328.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27965.1.S1_at--316--5531Chr03:34176745..34176769 (25 bp)
GAAACGAAACCCAGCCTTCATAAGG
LOC_Os03g60190
Os.27965.1.S1_at--279--1071Chr03:34176767..34176791 (25 bp)
AGGGATTGCCTGTTGTTTCATTTTC
LOC_Os03g60190
Os.27965.1.S1_at--372--10331Chr03:34176782..34176806 (25 bp)
TTTCATTTTCGCTAGGTGACACTGC
LOC_Os03g60190
Os.27965.1.S1_at--119--7051Chr03:34176890..34176914 (25 bp)
GTAAATCAAGGCTCATATTCCATGG
LOC_Os03g60190
Os.27965.1.S1_at--822--5431Chr03:34176987..34177011 (25 bp)
GAACCTCACATTCAGGCAGCATTAG
LOC_Os03g60190
Os.27965.1.S1_at--501--10011Chr03:34177009..34177033 (25 bp)
TAGCTTGCCCCGTATTAGATGTAGA
LOC_Os03g60190
Os.27965.1.S1_at--127--1331Chr03:34177031..34177055 (25 bp)
AGAGGGAACCTTGTTCTGTTCTGTT
LOC_Os03g60190
Os.27965.1.S1_at--162--9471Chr03:34177050..34177074 (25 bp)
TCTGTTGTAGTAGCTCAGTACCCAC
LOC_Os03g60190
Os.27965.1.S1_at--982--1171Chr03:34177066..34177090 (25 bp)
AGTACCCACCCTATTAGCATGAGTT
LOC_Os03g60190
Os.27965.1.S1_at--605--7531Chr03:34177246..34177270 (25 bp)
GTGGCATTGCCAGATTTGTGTTCTA
LOC_Os03g60190
Os.27965.1.S1_at--391--8731Chr03:34177272..34177296 (25 bp)
TGTAAATTCCTATCGTGACCACTCT
LOC_Os03g60190
Target Sequence 
GAAACGAAACCCAGCCTTCATAAGGGATTGCCTGTTGTTTCATTTTCGCTAGGTGACACTGCAGAATTCTTGTATGGTGA
CGTGAACGATGTGGATAAAGCTTCAAAGGTTGATCTGGAATCTGGTGATGTTCTCATATTTGGTGGTAAATCAAGGCTCA
TATTCCATGGGGTTTCCAGAATCAAACCAAAAACAGCACCAAATTGGCTGACCGATGAAGCAAAACTTCGACCTGGGCGT
CTGAACCTCACATTCAGGCAGCATTAGCTTGCCCCGTATTAGATGTAGAGGGAACCTTGTTCTGTTCTGTTGTAGTAGCT
CAGTACCCACCCTATTAGCATGAGTTAGCTGGTAGTACATTCGATCTAACTACTGGAAAACTCGAGAAGGAGTCAGATCA
AACTATGGAACATATATATATTTAGTGCAATTGATTTTCCTGTGATTATTATTTTTAGATATAATGGAAATCAATCCAGA
TTTGTGTTGTAGTTTGAAGAGGTGGCATTGCCAGATTTGTGTTCTAATGTAAATTCCTATCGTGACCACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis