Browse Element(s) Details


Os.6741.1.S1_at

Description gb:AK066104.1
DB_XREF= gi:32976122
TID=Os.6741.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6741 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052G16, full insert sequence.
FL= gb:AK066104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3930011/11LUC7 N_terminus domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39240OsAffx.24649.5.S1_s_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_x_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.2.S1_x_at1/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39250OsAffx.24648.1.S1_at11/112+23701742..23703321hypothetical protein
LOC_Os02g39260Os.55732.1.S1_at11/112+23705021..23706577Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g39270OsAffx.12407.1.S1_at11/112+23708748..23710071hypothetical protein
LOC_Os02g39280OsAffx.12408.1.S1_at11/112+23714568..23720311C2 domain containing protein, expressed
LOC_Os02g39290Os.35443.1.S1_at11/112+23720369..23723256TRAF-type zinc finger family protein, expressed
LOC_Os02g39300Os.6741.1.S1_at11/112+23723421..23728528LUC7 N_terminus domain-containing protein, putative, expressed
LOC_Os02g39310NANA2+23732381..23732650hypothetical protein
LOC_Os02g39320OsAffx.2915.1.S1_at11/112+23735968..23737061hypothetical protein
LOC_Os02g39330Os.11894.1.S1_at10/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39330OsAffx.15866.1.S1_x_at1/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39330Os.36593.2.S1_x_at1/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39340Os.33200.1.S1_at11/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39340OsAffx.28210.1.S1_at1/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39350Os.9176.1.S1_at11/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_x_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39360Os.3397.1.S1_at11/112+23753345..23754688B-box zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6741.1.S1_at--148--4591Chr02:23727446..23727470 (25 bp)
GCGCAAGATAGACCGAGCTGAGCAT
LOC_Os02g39300
Os.6741.1.S1_at--279--1371Chr02:23727613..23727637 (25 bp)
AGAGCATCTAGCAAGGATCGCCATA
LOC_Os02g39300
Os.6741.1.S1_at--326--1071Chr02:23727796..23727820 (25 bp)
AGGGACCGTTCCAGAGACTATGATC
LOC_Os02g39300
Os.6741.1.S1_at--65--5711Chr02:23727811..23728253 (25 bp)
GACTATGATCGATACGGGCGTGACG
LOC_Os02g39300
Os.6741.1.S1_at--388--9451Chr02:23728258..23728282 (25 bp)
TCGGCATCGACGCTAGACACATGGT
LOC_Os02g39300
Os.6741.1.S1_at--475--5631Chr02:23728273..23728297 (25 bp)
GACACATGGTCGAGGGTTTTAGCAT
LOC_Os02g39300
Os.6741.1.S1_at--799--5431Chr02:23728298..23728322 (25 bp)
GAACCGGATCGTTTGGTGTTTCAAT
LOC_Os02g39300
Os.6741.1.S1_at--973--6331Chr02:23728343..23728367 (25 bp)
GATGCTTATTTCCTGAGTATATCCA
LOC_Os02g39300
Os.6741.1.S1_at--206--251Chr02:23728361..23728385 (25 bp)
ATATCCATTTGCACTACCACCAATG
LOC_Os02g39300
Os.6741.1.S1_at--358--1251Chr02:23728466..23728490 (25 bp)
AGTTGTGGTATGTCTCAGATCATCC
LOC_Os02g39300
Os.6741.1.S1_at--56--3131Chr02:23728498..23728522 (25 bp)
AATTTGAAGATATCCTCTCCTCTTG
LOC_Os02g39300
Target Sequence 
GCGCAAGATAGACCGAGCTGAGCATGAGAGAAGGTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATC
GCCATAGAGGAGATCGAGGCAGCAGCCGTGATAGGGACAGGGATTATGACCGCAGGAGAAGCCATGATCGATACCATGAC
AGAGAAAGTAGGTCGGACAAGGACAGAGAATCAGGGAGATCCCATAGTTATGATTCAAGGGGCTACCGAAGGTCACGCTC
CCCTAGGGACCGTTCCAGAGACTATGATCGATACGGGCGTGACGACCGTCGGCATCGACGCTAGACACATGGTCGAGGGT
TTTAGCATGAACCGGATCGTTTGGTGTTTCAATTCAGAGGTTCATGTGGGAAAGATGCTTATTTCCTGAGTATATCCATT
TGCACTACCACCAATGAACATGGAACTGATGTAATAGCTACGTGAAGTTAGGATTCTAGTTGATGCTGATCATGTACAAC
CAAAATTGTGTTAAAGAGTTGTGGTATGTCTCAGATCATCCAAATTTAAATTTGAAGATATCCTCTCCTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis