Browse Element(s) Details


OsAffx.12407.1.S1_at

Description tigr:9630.m03777
TID=OsAffx.12407.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3927011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39220OsAffx.24649.1.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39220OsAffx.24649.3.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39230OsAffx.24649.4.S1_at11/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.2.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.5.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_s_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_x_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.2.S1_x_at1/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39250OsAffx.24648.1.S1_at11/112+23701742..23703321hypothetical protein
LOC_Os02g39260Os.55732.1.S1_at11/112+23705021..23706577Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g39270OsAffx.12407.1.S1_at11/112+23708748..23710071hypothetical protein
LOC_Os02g39280OsAffx.12408.1.S1_at11/112+23714568..23720311C2 domain containing protein, expressed
LOC_Os02g39290Os.35443.1.S1_at11/112+23720369..23723256TRAF-type zinc finger family protein, expressed
LOC_Os02g39300Os.6741.1.S1_at11/112+23723421..23728528LUC7 N_terminus domain-containing protein, putative, expressed
LOC_Os02g39310NANA2+23732381..23732650hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12407.1.S1_at--85--6151Chr02:23709239..23709263 (25 bp)
GAGGTGTGCATATGCGCTCCGCTGT
LOC_Os02g39270
OsAffx.12407.1.S1_at--594--8691Chr02:23709235..23709259 (25 bp)
TGTGCATATGCGCTCCGCTGTGCTC
LOC_Os02g39270
OsAffx.12407.1.S1_at--627--10131Chr02:23709229..23709253 (25 bp)
TATGCGCTCCGCTGTGCTCCTACGA
LOC_Os02g39270
OsAffx.12407.1.S1_at--10--3811Chr02:23709213..23709237 (25 bp)
CTCCTACGACGGGATCATGGGCATC
LOC_Os02g39270
OsAffx.12407.1.S1_at--44--9951Chr02:23709209..23709233 (25 bp)
TACGACGGGATCATGGGCATCCAAG
LOC_Os02g39270
OsAffx.12407.1.S1_at--993--7951Chr02:23709202..23709226 (25 bp)
GGATCATGGGCATCCAAGTCGACGC
LOC_Os02g39270
OsAffx.12407.1.S1_at--906--791Chr02:23709197..23709221 (25 bp)
ATGGGCATCCAAGTCGACGCCGTGG
LOC_Os02g39270
OsAffx.12407.1.S1_at--3--4171Chr02:23708861..23708885 (25 bp)
CGCCGCGGCGAGATAGACATGGCCA
LOC_Os02g39270
OsAffx.12407.1.S1_at--359--4611Chr02:23708854..23708878 (25 bp)
GCGAGATAGACATGGCCAACCGCCA
LOC_Os02g39270
OsAffx.12407.1.S1_at--1123--9291Chr02:23708791..23708815 (25 bp)
TCCGCCGGATGTCACTGGCCCATGT
LOC_Os02g39270
OsAffx.12407.1.S1_at--494--4491Chr02:23708788..23708812 (25 bp)
GCCGGATGTCACTGGCCCATGTCGC
LOC_Os02g39270
Target Sequence 
GAGGTGTGCATATGCGCTCCGCTGTGCTCCTACGACGGGATCATGGGCATCCAAGTCGACGCCGTGGCGCCGACGATGAT
GGCGAGGAGCAGCGCCGCTATCTCTCCCTCGCCACCGCGGCGGGCGTCTCCGGCCAGGTCCCCTACTGCTGGCGCCGCCG
GTGGTGGCGGTCGCCGCTCTCCCGCATCGCCGCGGACGGCGTCGTCCCCGAGGTCGAGCAGGGCCAGGGCGCACCCTGCG
CCGGTGTCCGTGGCGGCGCCGGCGCCGGCTGCGGCGGCCGTGGAGGGGCCGAGGAAGAGGGTCTCCTTCAGCGGCGGCGA
GTCGCTGTGGAACGACGAGCTGGTGCGGCGGTTCGTGCGGGCGCAGGAGGGGATGCCGCGCCGCGGCGAGATAGACATGG
CCAACCGCCACCGCCGGAGGAGGTGGCGGGCACCGGGGAAGAGCCGGCTCCGCCGGATGTCACTGGCCCATGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis