Browse Element(s) Details


OsAffx.24648.1.S1_at

Description tigr:9630.m03775
TID=OsAffx.24648.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3925011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39200Os.21852.1.S1_at11/112+23671476..23676789nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g39210OsAffx.2913.1.S1_at11/112+23677452..23678525hypothetical protein
LOC_Os02g39220OsAffx.24649.1.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39220OsAffx.24649.3.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39230OsAffx.24649.4.S1_at11/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.2.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.5.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_s_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_x_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.2.S1_x_at1/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39250OsAffx.24648.1.S1_at11/112+23701742..23703321hypothetical protein
LOC_Os02g39260Os.55732.1.S1_at11/112+23705021..23706577Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g39270OsAffx.12407.1.S1_at11/112+23708748..23710071hypothetical protein
LOC_Os02g39280OsAffx.12408.1.S1_at11/112+23714568..23720311C2 domain containing protein, expressed
LOC_Os02g39290Os.35443.1.S1_at11/112+23720369..23723256TRAF-type zinc finger family protein, expressed
LOC_Os02g39300Os.6741.1.S1_at11/112+23723421..23728528LUC7 N_terminus domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24648.1.S1_at--283--10391Chr02:23702898..23702922 (25 bp)
TTTTGGGACTTAGCCTGGATGCACG
LOC_Os02g39250
OsAffx.24648.1.S1_at--146--1811Chr02:23702867..23702891 (25 bp)
ACCCGAAGGATGTCATGCCACAAGT
LOC_Os02g39250
OsAffx.24648.1.S1_at--537--5431Chr02:23702816..23702840 (25 bp)
GAACCTTGAGGGATACCATCACAGA
LOC_Os02g39250
OsAffx.24648.1.S1_at--670--7791Chr02:23702783..23702807 (25 bp)
GGTCGCAAGACCTAAATCTCTCAAT
LOC_Os02g39250
OsAffx.24648.1.S1_at--639--5951Chr02:23702730..23702754 (25 bp)
GAGCAACTAGTGACCTTGTGGACAA
LOC_Os02g39250
OsAffx.24648.1.S1_at--171--2551Chr02:23702690..23702714 (25 bp)
AACTCTCCCCAGGTGTTGTAGATGA
LOC_Os02g39250
OsAffx.24648.1.S1_at--931--751Chr02:23702477..23702501 (25 bp)
ATGTCCAAACAACACTTACTGCCTG
LOC_Os02g39250
OsAffx.24648.1.S1_at--312--4471Chr02:23702457..23702481 (25 bp)
GCCTGCTCTGCAGACACGAATTGGA
LOC_Os02g39250
OsAffx.24648.1.S1_at--935--91Chr02:23702332..23702356 (25 bp)
ATTCCCGCTATAGTCCATACCTGGT
LOC_Os02g39250
OsAffx.24648.1.S1_at--802--311Chr02:23702316..23702340 (25 bp)
ATACCTGGTGTACAATCATCCGGAA
LOC_Os02g39250
OsAffx.24648.1.S1_at--539--391Chr02:23702302..23702326 (25 bp)
ATCATCCGGAAAGCGTAGGCACCAA
LOC_Os02g39250
Target Sequence 
TTTTGGGACTTAGCCTGGATGCACGGTCGCCACCCGAAGGATGTCATGCCACAAGTGTACACAATCTCCAAAGGGAAGAA
TAGAACCTTGAGGGATACCATCACAGACAATACCTGGTCGCAAGACCTAAATCTCTCAATCATCGGAGACATGTCAACTA
AGCTTCTAGAGCAACTAGTGACCTTGTGGACAACAGTTCAAAGCGTGCAACTCTCCCCAGGTGTTGTAGATGAAATCATT
TGGAGGCTCACAAATCATGAAGAATACTCGGGACTGGATATTAGACAAACTAGTGATTCAAGGATGTCCAAACAACACTT
ACTGCCTGCTCTGCAGACACGAATTGGAGACTGCTTTCCACCTCCTCGTGGACTGCAGATACATGAGAAGAATCTGGAAC
ATGCTCGCAAACTAGATGTTGCAAGGGCACATAAAGTCAGCCAGCTGGATTCCCGCTATAGTCCATACCTGGTGTACAAT
CATCCGGAAAGCGTAGGCACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis