Browse Element(s) Details


OsAffx.2915.1.S1_at

Description tigr:9630.m03782
TID=OsAffx.2915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3932011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39280OsAffx.12408.1.S1_at11/112+23714568..23720311C2 domain containing protein, expressed
LOC_Os02g39290Os.35443.1.S1_at11/112+23720369..23723256TRAF-type zinc finger family protein, expressed
LOC_Os02g39300Os.6741.1.S1_at11/112+23723421..23728528LUC7 N_terminus domain-containing protein, putative, expressed
LOC_Os02g39310NANA2+23732381..23732650hypothetical protein
LOC_Os02g39320OsAffx.2915.1.S1_at11/112+23735968..23737061hypothetical protein
LOC_Os02g39330Os.11894.1.S1_at10/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39330OsAffx.15866.1.S1_x_at1/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39330Os.36593.2.S1_x_at1/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39340Os.33200.1.S1_at11/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39340OsAffx.28210.1.S1_at1/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39350Os.9176.1.S1_at11/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_x_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39360Os.3397.1.S1_at11/112+23753345..23754688B-box zinc finger family protein, expressed
LOC_Os02g39370NANA2+23755253..23760009Met-10, expressed
LOC_Os02g39380NANA2+23760736..23761566EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2915.1.S1_at--592--10491Chr02:23737007..23737031 (25 bp)
TTAATCTGTTTGAACCGAGTCACCG
LOC_Os02g39320
OsAffx.2915.1.S1_at--78--3051Chr02:23737005..23737029 (25 bp)
AATCTGTTTGAACCGAGTCACCGAG
LOC_Os02g39320
OsAffx.2915.1.S1_at--368--3551Chr02:23737002..23737026 (25 bp)
CTGTTTGAACCGAGTCACCGAGAGT
LOC_Os02g39320
OsAffx.2915.1.S1_at--984--6851Chr02:23737000..23737024 (25 bp)
GTTTGAACCGAGTCACCGAGAGTGT
LOC_Os02g39320
OsAffx.2915.1.S1_at--188--10731Chr02:23736998..23737022 (25 bp)
TTGAACCGAGTCACCGAGAGTGTGC
LOC_Os02g39320
OsAffx.2915.1.S1_at--10--2631Chr02:23736995..23737019 (25 bp)
AACCGAGTCACCGAGAGTGTGCAGC
LOC_Os02g39320
OsAffx.2915.1.S1_at--802--4231Chr02:23736993..23737017 (25 bp)
CCGAGTCACCGAGAGTGTGCAGCAA
LOC_Os02g39320
OsAffx.2915.1.S1_at--849--6091Chr02:23736991..23737015 (25 bp)
GAGTCACCGAGAGTGTGCAGCAAGT
LOC_Os02g39320
OsAffx.2915.1.S1_at--192--7111Chr02:23736989..23737013 (25 bp)
GTCACCGAGAGTGTGCAGCAAGTAT
LOC_Os02g39320
OsAffx.2915.1.S1_at--606--6111Chr02:23736981..23737005 (25 bp)
GAGTGTGCAGCAAGTATACGATGGA
LOC_Os02g39320
OsAffx.2915.1.S1_at--609--7331Chr02:23736979..23737001 (23 bp)
GTGCAGCAAGTATACGATGGAAAAC
LOC_Os02g39320
Target Sequence 
TTAATCTGTTTGAACCGAGTCACCGAGAGTGTGCAGCAAGTATACGATGGAAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis