Browse Element(s) Details


Os.27355.1.A1_at

Description gb:AK073760.1
DB_XREF= gi:32983783
TID=Os.27355.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067C04, full insert sequence.
FL= gb:AK073760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3940011/11isochorismatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39340Os.33200.1.S1_at11/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39340OsAffx.28210.1.S1_at1/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39350Os.9176.1.S1_at11/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_x_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39360Os.3397.1.S1_at11/112+23753345..23754688B-box zinc finger family protein, expressed
LOC_Os02g39370NANA2+23755253..23760009Met-10, expressed
LOC_Os02g39380NANA2+23760736..23761566EF hand family protein, expressed
LOC_Os02g39390Os.51717.1.S1_at11/112+23763526..23766924expressed protein
LOC_Os02g39390OsAffx.25781.1.S1_at1/112+23763526..23766924expressed protein
LOC_Os02g39400Os.27355.1.A1_at11/112+23767238..23769792isochorismatase family protein, expressed
LOC_Os02g39410Os.18058.1.S1_x_at11/112+23770410..23776429Protein phosphatase 2C containing protein, expressed
LOC_Os02g39420Os.55732.1.S1_at4/112+23778892..23780064Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.5.S1_s_at11/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.2.S1_x_at4/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.5.S1_x_at1/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39440NANA2+23785790..23786943retrotransposon protein, putative, unclassified
LOC_Os02g39450NANA2+23789800..23790681hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.27355.1.A1_at--592--6231Chr02:23768598..23768622 (25 bp)
GATGGCTCAAATGTTTTTTCAGATT
LOC_Os02g39400
Os.27355.1.A1_at--1023--7912Chr02:23768773..23768797 (25 bp)
GGATTTTGCAAGTTCAGCTTTGGCT
LOC_Os02g39400
Os.27355.1.A1_at--693--10231Chr02:23768791..23768815 (25 bp)
TTTGGCTGCCAGGAACATTGGCCGA
LOC_Os02g39400
Os.27355.1.A1_at--405--7671Chr02:23768851..23768875 (25 bp)
GGGTTGTGCTACGTATAACCTCCCA
LOC_Os02g39400
Os.27355.1.A1_at--631--351Chr02:23768865..23768889 (25 bp)
ATAACCTCCCAGTTGAAGTAGCCAG
LOC_Os02g39400
Os.27355.1.A1_at--306--2931Chr02:23768898..23768921 (24 bp)
AAGGAACCTTGGCTCATCCTCAGGA
LOC_Os02g39400
Os.27355.1.A1_at--11--1011Chr02:23769445..23769469 (25 bp)
AGGATCTAATGCACCACATGGGACT
LOC_Os02g39400
Os.27355.1.A1_at--460--10071Chr02:23769555..23769579 (25 bp)
TAGTGACCTGGATCGATTATCTAGT
LOC_Os02g39400
Os.27355.1.A1_at--577--7871Chr02:23769582..23769606 (25 bp)
GGTTTTTATTGCTGGGACGATGATC
LOC_Os02g39400
Os.27355.1.A1_at--768--5771Chr02:23769597..23769621 (25 bp)
GACGATGATCCTAGTGTTCTCTTTA
LOC_Os02g39400
Os.27355.1.A1_at--1028--8791Chr02:23769611..23769635 (25 bp)
TGTTCTCTTTACTTCTTCCTTTTAT
LOC_Os02g39400
Target Sequence
GATGGCTCAAATGTTTTTTCAGATTGGGTTGCGAAGTTTCAGATCAAAACCGTATTGGTTTTAGGAATATGCACAGACTT
TTGTGTTTTGGATTTTGCAAGTTCAGCTTTGGCTGCCAGGAACATTGGCCGAGTGCCTCCGCTGGAAGATGTTGTCATTT
ATTCAGAGGGTTGTGCTACGTATAACCTCCCAGTTGAAGTAGCCAGGAGTATGCAAGGAACCTTGGCTCATCCTCAGGAT
CTAATGCACCACATGGGACTTTACATGGCAAAAAGCAGGGGTGCAAAGGTTGTTGACAGAATCATTATTTAAGATTAGAG
GTGTAAAACTAACACAAGACTGTAATAGTGACCTGGATCGATTATCTAGTTTGGTTTTTATTGCTGGGACGATGATCCTA
GTGTTCTCTTTACTTCTTCCTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27355.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis