Browse Element(s) Details


OsAffx.24242.2.S1_at

Description gb:NM_196188.1
DB_XREF= gi:37533735
TID=OsAffx.24242.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0019N10.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2404011/11transposon protein, putative, Pong sub-class
LOC_Os11g219608/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g391308/11transposon protein, putative, Pong sub-class
LOC_Os12g163203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23990Os.26886.3.S1_x_at6/1110+11959730..11962544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23990Os.26886.1.S1_x_at6/1110+11959730..11962544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g24000OsAffx.20424.1.S1_x_at11/1110+11965649..11966457hypothetical protein
LOC_Os10g24010OsAffx.20423.2.S1_x_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24010OsAffx.20423.1.S1_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24020Os.51020.1.S1_at10/1110+11976544..11980225transposon protein, putative, unclassified, expressed
LOC_Os10g24030OsAffx.18369.1.S1_at11/1110+11981065..11981416hypothetical protein
LOC_Os10g24040OsAffx.24242.2.S1_at11/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040Os.31929.11.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040OsAffx.24242.5.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24050OsAffx.30518.1.S1_at11/1110+11988785..11990321Ribosome inactivating protein
LOC_Os10g24060OsAffx.20421.1.S1_at11/1110+11993380..11994214hypothetical protein
LOC_Os10g24060OsAffx.15574.1.S1_at1/1110+11993380..11994214hypothetical protein
LOC_Os10g24070Os.14200.2.S1_x_at11/1110+11996060..12005435expressed protein
LOC_Os10g24070Os.14200.1.S1_at10/1110+11996060..12005435expressed protein
LOC_Os10g24080OsAffx.6747.2.S1_x_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.2.S1_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.1.S1_x_at2/1110+12006370..12007211hypothetical protein
LOC_Os10g24090NANA10+12011279..12011986hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24242.2.S1_at--407--2694Chr10:11985941..11985965 (25 bp)
AAGCTGAGGCATTATACTCGTCCAC
LOC_Os10g24040
OsAffx.24242.2.S1_at--266--8893Chr10:11985945..11985969 (25 bp)
TGAGGCATTATACTCGTCCACTGCA
LOC_Os10g24040
OsAffx.24242.2.S1_at--1018--10413Chr10:11985952..11985976 (25 bp)
TTATACTCGTCCACTGCACCAAAGA
LOC_Os10g24040
OsAffx.24242.2.S1_at--5--2013Chr10:11985956..11985980 (25 bp)
ACTCGTCCACTGCACCAAAGAATAG
LOC_Os10g24040
OsAffx.24242.2.S1_at--37--9854Chr10:11986131..11986155 (25 bp)
TACAGCTCCTGATTTATCTCAGCCG
LOC_Os10g24040
OsAffx.24242.2.S1_at--679--4794Chr10:11986135..11986159 (25 bp)
GCTCCTGATTTATCTCAGCCGAGTG
LOC_Os10g24040
OsAffx.24242.2.S1_at--47--1733Chr10:11986393..11986417 (25 bp)
ACCTTGGAACCGGATGTGAGAACGT
LOC_Os10g24040
OsAffx.24242.2.S1_at--781--3593Chr10:11986395..11986419 (25 bp)
CTTGGAACCGGATGTGAGAACGTAT
LOC_Os10g24040
OsAffx.24242.2.S1_at--142--8692Chr10:11986419..11986443 (25 bp)
TGTGTTGGCTATGAGAGCACAGATT
LOC_Os10g24040
OsAffx.24242.2.S1_at--1099--4851Chr10:11986426..11986450 (25 bp)
GCTATGAGAGCACAGATTGCAGCTT
LOC_Os10g24040
OsAffx.24242.2.S1_at--217--5991Chr10:11986431..11986455 (25 bp)
GAGAGCACAGATTGCAGCTTCAAAG
LOC_Os10g24040
Target Sequence 
AAGCTGAGGCATTATACTCGTCCACTGCACCAAAGAATAGGGCATTTCAGTTTAATCATTGTTGGCTCAAGTTGAGGAAT
TCTCCTAAGTTTCAAACACTAGAATCCCACAAGAGGCCACGGTCTAGGAAGTCTTCGACCCCAATTGAGAGAGCTGGTGA
AGAAGATGAAGGAGATGATGCTAGCAAGAGTACAGCTCCTGATTTATCTCAGCCGAGTGCTAAAAAGAGACCAATAGATA
GGAAGCAAGCAAAGGAGAAGTTGAAGAATGGAGGAGAAGATGGACCATACAAAGAGGCGATGAAAGATTTGCTTGACGCT
AAAGAGAAAGAAGCAAAATTGAAAGAAGAGAGATGGAAGGGAACTAAGGAGATTCAAGAGCGCAAGCTCTTATTTGCTGA
GCGTAAGTTAGTGTGGGATCAAGAACAGAAGATTATGTTTTGTGATGTTTCCACCTTGGAACCGGATGTGAGAACGTATG
TGTTGGCTATGAGAGCACAGATTGCAGCTTCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24242.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis