Browse Element(s) Details


OsAffx.24242.5.S1_x_at

Description tigr:9630.m01857
TID=OsAffx.24242.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g194609/11hypothetical protein
LOC_Os08g127901/11hypothetical protein
LOC_Os02g258501/11transposon protein, putative, Pong sub-class
LOC_Os02g141401/11hypothetical protein
LOC_Os10g240401/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19420Os.13737.1.S1_s_at11/112+11339975..11344905Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19420OsAffx.12121.1.S1_at11/112+11339975..11344905Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19430NANA2+11352154..11352673hypothetical protein
LOC_Os02g19440Os.9791.1.S1_at11/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19440Os.9791.1.S1_x_at11/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19440OsAffx.24325.1.S1_at10/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19450OsAffx.2685.1.S1_x_at11/112+11361414..11363761ATPase, AAA family protein, expressed
LOC_Os02g19450OsAffx.2685.1.S1_at11/112+11361414..11363761ATPase, AAA family protein, expressed
LOC_Os02g19460OsAffx.24242.5.S1_x_at9/112+11368560..11370492hypothetical protein
LOC_Os02g19460OsAffx.24242.5.S1_at9/112+11368560..11370492hypothetical protein
LOC_Os02g19460OsAffx.29326.1.S1_at1/112+11368560..11370492hypothetical protein
LOC_Os02g19470Os.49682.1.S1_at11/112+11376715..11379300expressed protein
LOC_Os02g19480NANA2+11385464..11386500retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g19490OsAffx.24327.1.S1_at11/112+11387831..11390408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g19499NANA2+11393058..11393214NA

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24242.5.S1_x_at--192--2751Chr02:11368892..11368916 (25 bp)
AAGAAAGTTTCAGGGCTGCTACGAT
LOC_Os02g19460
OsAffx.24242.5.S1_x_at--91--6831Chr02:11368898..11368922 (25 bp)
GTTTCAGGGCTGCTACGATCAAATT
LOC_Os02g19460
OsAffx.24242.5.S1_x_at--1162--8311Chr02:11368905..11368929 (25 bp)
GGCTGCTACGATCAAATTGAGCGTC
LOC_Os02g19460
OsAffx.24242.5.S1_x_at--843--10756Chr10:11985817..11985840 (24 bp)
TTGAGCGTCGACATCCAAGTGGCAT
LOC_Os10g24040
OsAffx.24242.5.S1_x_at--514--7532Chr06:23948236..23948276 (25 bp)
GTGGCATACCACATCAGGAGCTTGT
NONE
OsAffx.24242.5.S1_x_at--1109--4931Chr02:11369054..11369078 (25 bp)
GCATTGTACTCATCGAATGCACCAA
LOC_Os02g19460
OsAffx.24242.5.S1_x_at--938--6991Chr02:11369059..11369083 (25 bp)
GTACTCATCGAATGCACCAAAGAAT
LOC_Os02g19460
OsAffx.24242.5.S1_x_at--963--2731Chr02:11369340..11369364 (25 bp)
AAGAGGCGATGAAAGTGTTAGAGTT
LOC_Os02g19460
OsAffx.24242.5.S1_x_at--50--7231NONE
GTCGAATATGTGTGCTGACGGGATT
NONE
OsAffx.24242.5.S1_x_at--274--271NONE
ATATGTGTGCTGACGGGATTCGACG
NONE
OsAffx.24242.5.S1_x_at--450--1451Chr02:11370429..11370453 (25 bp)
AGAAGCGGCGGCGAACCTCCAAGGC
LOC_Os02g19460
Target Sequence 
AAGAAAGTTTCAGGGCTGCTACGATCAAATTGAGCGTCGACATCCAAGTGGCATACCACATCAGGAGCTTGTTCTTGAAG
TCGAGGCATTGTACTCATCGAATGCACCAAAGAATAGGGCATTTCAGTTTAATCATTGTTGGCTCAAGTTGAGGAATTCT
CCGAAGTTTCAAACTCTAGAATCCCACAAGAGGCCAAGGTCTAGGAAGTCTTCGACCCCAATTGAGATAGCTGGTGAAGA
AGATGAAGAAGGAGATGATGCTAGGAAGAGTACAACTCCTGATTTATCACAGCCAAGTGCTAAAAAGAGACCAATCGGTA
GGAAGCAAGCAAAGGAGAAGTTGAAGAATGGAGGAGAAGATGGACCATACAAAGAGGCGATGAAAGTGTTAGAGTTTGTG
TCGAATATGTGTGCTGACGGGATTCGACGCGGGCCGGCTCCGGTGATTGGAGGCGGCGGCTTTCGCGGGGAGCAGTGGTG
TCGGTTGCTTCGGGGAGAAGCGGCGGCGAACCTCCAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24242.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis