Browse Element(s) Details


OsAffx.12121.1.S1_at

Description tigr:9630.m01853
TID=OsAffx.12121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to RCD1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1942011/11Cell differentiation protein rcd1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19380OsAffx.24324.1.S1_at10/112+11316688..11318611microfibril-associated protein, putative
LOC_Os02g19390OsAffx.20729.1.S1_x_at1/112+11326851..11329119retrotransposon protein, putative, unclassified
LOC_Os02g19390OsAffx.1674.1.S1_at1/112+11326851..11329119retrotransposon protein, putative, unclassified
LOC_Os02g19400OsAffx.20380.1.S1_at1/112+11329784..11333177retrotransposon protein, putative, unclassified, expressed
LOC_Os02g19400OsAffx.20380.1.S1_x_at1/112+11329784..11333177retrotransposon protein, putative, unclassified, expressed
LOC_Os02g19400OsAffx.22927.1.S1_x_at1/112+11329784..11333177retrotransposon protein, putative, unclassified, expressed
LOC_Os02g19410OsAffx.12120.1.S1_at11/112+11335644..11337705hypothetical protein
LOC_Os02g19420Os.13737.1.S1_s_at11/112+11339975..11344905Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19420OsAffx.12121.1.S1_at11/112+11339975..11344905Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19430NANA2+11352154..11352673hypothetical protein
LOC_Os02g19440Os.9791.1.S1_at11/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19440Os.9791.1.S1_x_at11/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19440OsAffx.24325.1.S1_at10/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19450OsAffx.2685.1.S1_x_at11/112+11361414..11363761ATPase, AAA family protein, expressed
LOC_Os02g19450OsAffx.2685.1.S1_at11/112+11361414..11363761ATPase, AAA family protein, expressed
LOC_Os02g19460OsAffx.24242.5.S1_x_at9/112+11368560..11370492hypothetical protein
LOC_Os02g19460OsAffx.24242.5.S1_at9/112+11368560..11370492hypothetical protein
LOC_Os02g19460OsAffx.29326.1.S1_at1/112+11368560..11370492hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12121.1.S1_at--445--3911Chr02:11344370..11344394 (25 bp)
CGGAGACTAGGACCCATTTCTTACA
LOC_Os02g19420
OsAffx.12121.1.S1_at--25--4951Chr02:11343423..11343447 (25 bp)
GCATTCCGTTGTACCTATGTGCATT
LOC_Os02g19420
OsAffx.12121.1.S1_at--287--5551Chr02:11343394..11343418 (25 bp)
GAAACTGATGACAAGGCCAAACAAT
LOC_Os02g19420
OsAffx.12121.1.S1_at--52--3131Chr02:11343372..11343396 (25 bp)
AATTTGAGTACTTGCGGTTGACCAG
LOC_Os02g19420
OsAffx.12121.1.S1_at--216--10271Chr02:11341992..11342016 (25 bp)
TTTGTTCCTCTATGCCTGCATAATA
LOC_Os02g19420
OsAffx.12121.1.S1_at--904--8651Chr02:11340746..11340769 (24 bp)
TGTGGCAACTTTTATCACTGAAAAA
LOC_Os02g19420
OsAffx.12121.1.S1_at--730--3171Chr02:11340722..11340746 (25 bp)
AATTGTCGTAGATGACGCCGGTCTA
LOC_Os02g19420
OsAffx.12121.1.S1_at--504--4491Chr02:11340706..11340730 (25 bp)
GCCGGTCTAGCTTATGTTTGTGCCA
LOC_Os02g19420
OsAffx.12121.1.S1_at--372--10831Chr02:11340689..11340713 (25 bp)
TTGTGCCAATGCTGATCGGTTCTAT
LOC_Os02g19420
OsAffx.12121.1.S1_at--949--3011Chr02:11340682..11340706 (25 bp)
AATGCTGATCGGTTCTATGCTGTGG
LOC_Os02g19420
OsAffx.12121.1.S1_at--1036--1591Chr02:11340656..11340680 (25 bp)
AGCTGCTTTAGCAACCGTGGTTACC
LOC_Os02g19420
Target Sequence 
CGGAGACTAGGACCCATTTCTTACAAGCCCGCATTCCGTTGTACCTATGTGCATTTTTGGAAACTGATGACAAGGCCAAA
CAATTTGAGTACTTGCGGTTGACCAGCTTGGGTGTCATTGGCGCTCTTGTTAAGGTTGATGATCCAAAAATTATCAATTT
TCTGCTGGAAAATGAATTTGTTCCTCTATGCCTGCATAATATGACGATCGGCAGTGAATTATCAAAAACTGTGGCAACTT
TTATCACTGAAAAAATTGTCGTAGATGACGCCGGTCTAGCTTATGTTTGTGCCAATGCTGATCGGTTCTATGCTGTGGGA
GCTGCTTTAGCAACCGTGGTTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis