Browse Element(s) Details


Os.9791.1.S1_at

Description gb:AK064811.1
DB_XREF= gi:32974829
TID=Os.9791.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000E01, full insert sequence.
FL= gb:AK064811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1944011/11CbiX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19390OsAffx.20729.1.S1_x_at1/112+11326851..11329119retrotransposon protein, putative, unclassified
LOC_Os02g19390OsAffx.1674.1.S1_at1/112+11326851..11329119retrotransposon protein, putative, unclassified
LOC_Os02g19400OsAffx.20380.1.S1_at1/112+11329784..11333177retrotransposon protein, putative, unclassified, expressed
LOC_Os02g19400OsAffx.20380.1.S1_x_at1/112+11329784..11333177retrotransposon protein, putative, unclassified, expressed
LOC_Os02g19400OsAffx.22927.1.S1_x_at1/112+11329784..11333177retrotransposon protein, putative, unclassified, expressed
LOC_Os02g19410OsAffx.12120.1.S1_at11/112+11335644..11337705hypothetical protein
LOC_Os02g19420Os.13737.1.S1_s_at11/112+11339975..11344905Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19420OsAffx.12121.1.S1_at11/112+11339975..11344905Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19430NANA2+11352154..11352673hypothetical protein
LOC_Os02g19440Os.9791.1.S1_at11/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19440Os.9791.1.S1_x_at11/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19440OsAffx.24325.1.S1_at10/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19450OsAffx.2685.1.S1_x_at11/112+11361414..11363761ATPase, AAA family protein, expressed
LOC_Os02g19450OsAffx.2685.1.S1_at11/112+11361414..11363761ATPase, AAA family protein, expressed
LOC_Os02g19460OsAffx.24242.5.S1_x_at9/112+11368560..11370492hypothetical protein
LOC_Os02g19460OsAffx.24242.5.S1_at9/112+11368560..11370492hypothetical protein
LOC_Os02g19460OsAffx.29326.1.S1_at1/112+11368560..11370492hypothetical protein
LOC_Os02g19470Os.49682.1.S1_at11/112+11376715..11379300expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0051266molecular_functionsirohydrochlorin ferrochelatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9791.1.S1_at--820--172Chr02:11231360..11231384 (25 bp)
ATTTTTTCATGCAATCAACTAGGCC
NONE
Os.9791.1.S1_at--942--10352Chr02:11231363..11231387 (25 bp)
TTTTCATGCAATCAACTAGGCCGGA
NONE
Os.9791.1.S1_at--1066--9612Chr02:11231366..11231390 (25 bp)
TCATGCAATCAACTAGGCCGGAGCT
NONE
Os.9791.1.S1_at--719--9012Chr02:11231369..11231393 (25 bp)
TGCAATCAACTAGGCCGGAGCTATA
NONE
Os.9791.1.S1_at--162--9711Chr02:11353421..11353445 (25 bp)
TCAACTAGGCCGGAGCTATATATTT
LOC_Os02g19440
Os.9791.1.S1_at--1110--1991Chr02:11353418..11353442 (25 bp)
ACTAGGCCGGAGCTATATATTTTTT
LOC_Os02g19440
Os.9791.1.S1_at--434--8791Chr02:11353384..11353408 (25 bp)
TGTTAATCCATCTACCTGCCATCTA
LOC_Os02g19440
Os.9791.1.S1_at--504--451Chr02:11353375..11353399 (25 bp)
ATCTACCTGCCATCTACCATGTAAC
LOC_Os02g19440
Os.9791.1.S1_at--690--2071Chr02:11353324..11353348 (25 bp)
ACTTGTGGGCCGTGCTCTGTATGGC
LOC_Os02g19440
Os.9791.1.S1_at--701--4812Chr02:11231489..11231513 (25 bp)
GCTCTGTATGGCCTGGAATGAAGAA
NONE
Os.9791.1.S1_at--1078--4451Chr02:11353301..11353325 (25 bp)
GCCTGGAATGAAGAAACTGTTACCT
LOC_Os02g19440
Target Sequence 
ATTTTTTCATGCAATCAACTAGGCCGGAGCTATATATTTTTTTGGATGATTTGTTAATCCATCTACCTGCCATCTACCAT
GTAACNATTTACTGAAAGAAAAATGTACNAGTACTTGTGGGCCGTGCTCTGTATGGCCTGGAATGAAGAAACTGTTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis