Browse Element(s) Details


OsAffx.12120.1.S1_at

Description tigr:9630.m01852
TID=OsAffx.12120.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1941011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19370NANA2+11312071..11313481hypothetical protein
LOC_Os02g19380OsAffx.24324.1.S1_at10/112+11316688..11318611microfibril-associated protein, putative
LOC_Os02g19390OsAffx.20729.1.S1_x_at1/112+11326851..11329119retrotransposon protein, putative, unclassified
LOC_Os02g19390OsAffx.1674.1.S1_at1/112+11326851..11329119retrotransposon protein, putative, unclassified
LOC_Os02g19400OsAffx.20380.1.S1_at1/112+11329784..11333177retrotransposon protein, putative, unclassified, expressed
LOC_Os02g19400OsAffx.20380.1.S1_x_at1/112+11329784..11333177retrotransposon protein, putative, unclassified, expressed
LOC_Os02g19400OsAffx.22927.1.S1_x_at1/112+11329784..11333177retrotransposon protein, putative, unclassified, expressed
LOC_Os02g19410OsAffx.12120.1.S1_at11/112+11335644..11337705hypothetical protein
LOC_Os02g19420Os.13737.1.S1_s_at11/112+11339975..11344905Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19420OsAffx.12121.1.S1_at11/112+11339975..11344905Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19430NANA2+11352154..11352673hypothetical protein
LOC_Os02g19440Os.9791.1.S1_at11/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19440Os.9791.1.S1_x_at11/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19440OsAffx.24325.1.S1_at10/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19450OsAffx.2685.1.S1_x_at11/112+11361414..11363761ATPase, AAA family protein, expressed
LOC_Os02g19450OsAffx.2685.1.S1_at11/112+11361414..11363761ATPase, AAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12120.1.S1_at--270--8891Chr02:11336788..11336812 (25 bp)
TGAGTTTACTCTCGTATGTCTCCAC
LOC_Os02g19410
OsAffx.12120.1.S1_at--952--7471Chr02:11336748..11336772 (25 bp)
GTGTGGACTCACAACTTGTCTCAAA
LOC_Os02g19410
OsAffx.12120.1.S1_at--796--8131Chr02:11336717..11336741 (25 bp)
GGACATTATCTCATTCTGTTGCAAG
LOC_Os02g19410
OsAffx.12120.1.S1_at--815--10171Chr02:11336686..11336710 (25 bp)
TATACTTCAAGCATCCGTTACAGAG
LOC_Os02g19410
OsAffx.12120.1.S1_at--1027--1311Chr02:11336665..11336689 (25 bp)
AGAGGCTGGAGAATCGTGTGCCCAT
LOC_Os02g19410
OsAffx.12120.1.S1_at--958--8691Chr02:11336649..11336673 (25 bp)
TGTGCCCATGTCAGTATTCTCGGAA
LOC_Os02g19410
OsAffx.12120.1.S1_at--1098--6851Chr02:11336636..11336660 (25 bp)
GTATTCTCGGAATCGCAAACGCTGG
LOC_Os02g19410
OsAffx.12120.1.S1_at--1131--6471Chr02:11336542..11336566 (25 bp)
GGTTTACGAAATCTGTCCCGAGGAT
LOC_Os02g19410
OsAffx.12120.1.S1_at--480--2251Chr02:11336474..11336496 (23 bp)
AAATTTCCAGCACATCTTACAGGCC
LOC_Os02g19410
OsAffx.12120.1.S1_at--492--9871Chr02:11336376..11336479 (25 bp)
TACAGGCCTATGTACTCTGGTGTAT
LOC_Os02g19410
OsAffx.12120.1.S1_at--1136--7431Chr02:11335684..11335708 (25 bp)
GTGTACTGAGGACTAGCGATCTATC
LOC_Os02g19410
Target Sequence 
TGAGTTTACTCTCGTATGTCTCCACCCCACAAAACTTCAAGTGTGGACTCACAACTTGTCTCAAATTACATGGACATTAT
CTCATTCTGTTGCAAGGGATGATATACTTCAAGCATCCGTTACAGAGGCTGGAGAATCGTGTGCCCATGTCAGTATTCTC
GGAATCGCAAACGCTGGGAAGTCAGCATTTCTAAAGCTGGATGATTCTATATTCTTATTGGACATCGTTGCAAAGAACAT
GACCAAGGTTTACGAAATCTGTCCCGAGGATGGGGATATTGAAAGAATATATCCACTGCTGATGATCTGGCCACCAAAAT
TTCCAGCACATCTTACAGGCCTATGTACTCTGGTGTATTTGGTTGATAATCAGTTTTTACTTGAGAGAGGAATGAAAATT
CTGGGAGGAAAATGTGTACTGAGGACTAGCGATCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis