Browse Element(s) Details


OsAffx.24327.1.S1_at

Description tigr:9630.m01860
TID=OsAffx.24327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1949011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19450OsAffx.2685.1.S1_x_at11/112+11361414..11363761ATPase, AAA family protein, expressed
LOC_Os02g19450OsAffx.2685.1.S1_at11/112+11361414..11363761ATPase, AAA family protein, expressed
LOC_Os02g19460OsAffx.24242.5.S1_x_at9/112+11368560..11370492hypothetical protein
LOC_Os02g19460OsAffx.24242.5.S1_at9/112+11368560..11370492hypothetical protein
LOC_Os02g19460OsAffx.29326.1.S1_at1/112+11368560..11370492hypothetical protein
LOC_Os02g19470Os.49682.1.S1_at11/112+11376715..11379300expressed protein
LOC_Os02g19480NANA2+11385464..11386500retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g19490OsAffx.24327.1.S1_at11/112+11387831..11390408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g19499NANA2+11393058..11393214NA
LOC_Os02g19510Os.7757.1.S1_at11/112+11399631..11404041expressed protein
LOC_Os02g19520OsAffx.10900.1.S1_x_at1/112+11404342..11408426transposon protein, putative, Mutator sub-class
LOC_Os02g19530OsAffx.24328.1.S1_at11/112+11411029..11413080lectin receptor kinase 7, putative
LOC_Os02g19540OsAffx.24329.1.S1_at10/112+11414812..11416684F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24327.1.S1_at--844--2672Chr02:11387943..11387967 (25 bp)
AAGCGAGCGCTTTGCCTGGAGGTCC
LOC_Os02g19490
OsAffx.24327.1.S1_at--82--6611Chr02:11389512..11389533 (22 bp)
GATTGGTTCACAACAACATGCGGGA
LOC_Os02g19490
OsAffx.24327.1.S1_at--1125--8151Chr02:11389531..11389555 (25 bp)
GGAACGGCGACCGAATCTGCCTCGT
LOC_Os02g19490
OsAffx.24327.1.S1_at--659--7971Chr02:11389576..11389600 (25 bp)
GGATCGGTGTCGTTGCATTCGCCTA
LOC_Os02g19490
OsAffx.24327.1.S1_at--260--5951Chr02:11389636..11389660 (25 bp)
GAGCAATCGCATGCTGCCACGTCTT
LOC_Os02g19490
OsAffx.24327.1.S1_at--781--8471Chr02:11389698..11389722 (25 bp)
TGGCGTTGGCGCATTCATGTCATCG
LOC_Os02g19490
OsAffx.24327.1.S1_at--310--511Chr02:11389719..11389743 (25 bp)
ATCGTCTCACTCTGCTGCGGTAGAT
LOC_Os02g19490
OsAffx.24327.1.S1_at--423--7851Chr02:11389737..11389761 (25 bp)
GGTAGATTCCACGTCAGGATCTTCT
LOC_Os02g19490
OsAffx.24327.1.S1_at--1158--991Chr02:11389752..11389776 (25 bp)
AGGATCTTCTGGTCACACGAGCTGA
LOC_Os02g19490
OsAffx.24327.1.S1_at--793--2171Chr02:11389766..11389790 (25 bp)
ACACGAGCTGATGAGCACCACAGAA
LOC_Os02g19490
OsAffx.24327.1.S1_at--173--1271Chr02:11389790..11389814 (25 bp)
AGATCCATCATCAGCTCAGAATAAT
LOC_Os02g19490
Target Sequence 
AAGCGAGCGCTTTGCCTGGAGGTCCCACGGAGGTGAAGCGCGAGCAGCGGCAGGAGGAGAAGCGAGTGGATTGGTTCACA
ACAACATGCGGGAACGGCGACCGAATCTGCCTCGTCTGCCGTGATGCTGTCCTCGGGATCGGTGTCGTTGCATTCGCCTA
CTTCTTCCGTGCCGTCAGCTCCGACTTCACCGCCCGAGCAATCGCATGCTGCCACGTCTTCACCCACACGTTCTTCAGCG
TCCTCGGGACCCCAGTCTGGCGTTGGCGCATTCATGTCATCGTCTCACTCTGCTGCGGTAGATTCCACGTCAGGATCTTC
TGGTCACACGAGCTGATGAGCACCACAGAAGATCCATCATCAGCTCAGAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis