Browse Element(s) Details


OsAffx.10900.1.S1_x_at

Description tigr:9629.m00321
TID=OsAffx.10900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g195201/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19480NANA2+11385464..11386500retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g19490OsAffx.24327.1.S1_at11/112+11387831..11390408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g19499NANA2+11393058..11393214NA
LOC_Os02g19510Os.7757.1.S1_at11/112+11399631..11404041expressed protein
LOC_Os02g19520OsAffx.10900.1.S1_x_at1/112+11404342..11408426transposon protein, putative, Mutator sub-class
LOC_Os02g19530OsAffx.24328.1.S1_at11/112+11411029..11413080lectin receptor kinase 7, putative
LOC_Os02g19540OsAffx.24329.1.S1_at10/112+11414812..11416684F-box domain containing protein
LOC_Os02g19550Os.53772.2.S1_at11/112+11427604..11429893lectin receptor kinase 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10900.1.S1_x_at--1109--7054Chr01:1759961..1759985 (25 bp)
GTAAGCGCCACGTCGATGTCACATG
NONE
OsAffx.10900.1.S1_x_at--194--7991Chr01:1759986..1760010 (25 bp)
GGATGAAGACCAGATAAACCCGCCA
NONE
OsAffx.10900.1.S1_x_at--546--6311Chr01:1759987..1760011 (25 bp)
GATGAAGACCAGATAAACCCGCCAC
NONE
OsAffx.10900.1.S1_x_at--711--631Chr01:1759988..1760012 (25 bp)
ATGAAGACCAGATAAACCCGCCACG
NONE
OsAffx.10900.1.S1_x_at--311--8991Chr01:1759989..1760013 (25 bp)
TGAAGACCAGATAAACCCGCCACGT
NONE
OsAffx.10900.1.S1_x_at--701--5351Chr01:1759990..1760014 (25 bp)
GAAGACCAGATAAACCCGCCACGTA
NONE
OsAffx.10900.1.S1_x_at--75--1371Chr01:1759992..1760016 (25 bp)
AGACCAGATAAACCCGCCACGTAAG
NONE
OsAffx.10900.1.S1_x_at--522--3431Chr01:1759996..1760020 (25 bp)
CAGATAAACCCGCCACGTAAGTGCC
NONE
OsAffx.10900.1.S1_x_at--284--1794Chr11:28243832..28243856 (25 bp)
ACCGCCTCCGAAACCATCGAGGGAG
NONE
OsAffx.10900.1.S1_x_at--1052--3712Chr02:34456846..34456865 (20 bp)
CCGAAACCATCGAGGGAGTCGATTT
NONE
OsAffx.10900.1.S1_x_at--151--5331Chr01:1760076..1760100 (25 bp)
GAAGTTAAGGGACAAGTTATATCCG
NONE
Target Sequence 
GTAAGCGCCACGTCGATGTCACATGGGATGAAGACCAGATAAACCCGCCACGTAAGTGCCACGTGGGAAAAACCGCCTCC
GAAACCATCGAGGGAGTCGATTTGCAACGGTTTTTGAAGTTAAGGGACAAGTTATATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10900.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis