Browse Element(s) Details


Os.7757.1.S1_at

Description gb:AK122023.1
DB_XREF= gi:37991646
TID=Os.7757.1
CNT=41
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111P12, full insert sequence.
FL= gb:AK122023.1 gb:AK064947.1 gb:AK101533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1951011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19470Os.49682.1.S1_at11/112+11376715..11379300expressed protein
LOC_Os02g19480NANA2+11385464..11386500retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g19490OsAffx.24327.1.S1_at11/112+11387831..11390408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g19499NANA2+11393058..11393214NA
LOC_Os02g19510Os.7757.1.S1_at11/112+11399631..11404041expressed protein
LOC_Os02g19520OsAffx.10900.1.S1_x_at1/112+11404342..11408426transposon protein, putative, Mutator sub-class
LOC_Os02g19530OsAffx.24328.1.S1_at11/112+11411029..11413080lectin receptor kinase 7, putative
LOC_Os02g19540OsAffx.24329.1.S1_at10/112+11414812..11416684F-box domain containing protein
LOC_Os02g19550Os.53772.2.S1_at11/112+11427604..11429893lectin receptor kinase 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7757.1.S1_at--920--6232Chr02:11403622..11403646 (25 bp)
GATGGCAAGGTTTCTATTTCGGCAA
LOC_Os02g19510
Os.7757.1.S1_at--425--10191Chr02:11403636..11403660 (25 bp)
TATTTCGGCAACCTAGCTGGACCTT
LOC_Os02g19510
Os.7757.1.S1_at--774--8091Chr02:11403654..11403678 (25 bp)
GGACCTTCCATATTATTCAGTACGT
LOC_Os02g19510
Os.7757.1.S1_at--838--6991Chr02:11403673..11403697 (25 bp)
GTACGTTCATCAAAGCAGGTGCCTC
LOC_Os02g19510
Os.7757.1.S1_at--289--10191Chr02:11403700..11403724 (25 bp)
TATAGAGCTACAGTTCCTTTGCCAG
LOC_Os02g19510
Os.7757.1.S1_at--286--2111Chr02:11403731..11403755 (25 bp)
ACATGGAAAGCTCTCGTGGATCCCA
LOC_Os02g19510
Os.7757.1.S1_at--288--7511Chr02:11403746..11403770 (25 bp)
GTGGATCCCACGACTACTGTTTAAT
LOC_Os02g19510
Os.7757.1.S1_at--572--6751Chr02:11403781..11403805 (25 bp)
GTTCAGTTGGTTCTAGTCTCATTTT
LOC_Os02g19510
Os.7757.1.S1_at--20--3871Chr02:11403859..11403883 (25 bp)
CTGAGGGCCGAGCACTTTGTTTATA
LOC_Os02g19510
Os.7757.1.S1_at--602--6611Chr02:11403914..11403938 (25 bp)
GTTGGCGTTGCATTGATTCCCATTA
LOC_Os02g19510
Os.7757.1.S1_at--293--171Chr02:11403999..11404023 (25 bp)
ATTTTGTTTTATGCCACCTGTGTAA
LOC_Os02g19510
Target Sequence 
GATGGCAAGGTTTCTATTTCGGCAACCTAGCTGGACCTTCCATATTATTCAGTACGTTCATCAAAGCAGGTGCCTCTATA
TAGAGCTACAGTTCCTTTGCCAGATTTGTACATGGAAAGCTCTCGTGGATCCCACGACTACTGTTTAATCCTAGCTTTGG
TTCAGTTGGTTCTAGTCTCATTTTGTTTTTGGGTAGTGTGACTAGCTGCGATGTAAGTAGGCGATGTAGCATGGATTCTG
AGGGCCGAGCACTTTGTTTATACNATCTGTTGTATCATTGACTGGATGCAATGTTGGCGTTGCATTGATTCCCATTACTT
GTTTCATCATGTAAATTATTCAGCTGGTCTTACTGTTTTATGGAGTTAAGGTCGAGCATTTTGTTTTATGCCACCTGTGT
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis