Browse Element(s) Details


OsAffx.24329.1.S1_at

Description tigr:9630.m01865
TID=OsAffx.24329.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1954010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19490OsAffx.24327.1.S1_at11/112+11387831..11390408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g19499NANA2+11393058..11393214NA
LOC_Os02g19510Os.7757.1.S1_at11/112+11399631..11404041expressed protein
LOC_Os02g19520OsAffx.10900.1.S1_x_at1/112+11404342..11408426transposon protein, putative, Mutator sub-class
LOC_Os02g19530OsAffx.24328.1.S1_at11/112+11411029..11413080lectin receptor kinase 7, putative
LOC_Os02g19540OsAffx.24329.1.S1_at10/112+11414812..11416684F-box domain containing protein
LOC_Os02g19550Os.53772.2.S1_at11/112+11427604..11429893lectin receptor kinase 7, putative, expressed
LOC_Os02g19560NANA2+11433905..11434321NA
LOC_Os02g19570OsAffx.13987.1.S1_at1/112+11435644..11437342retrotransposon protein, putative, unclassified
LOC_Os02g19580OsAffx.10110.3.S1_s_at1/112+11439762..11442342hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24329.1.S1_at--261--9891Chr02:11416412..11416436 (25 bp)
TACTACCAGCCTAAGCGCCAAGAAC
LOC_Os02g19540
OsAffx.24329.1.S1_at--516--9171NONE
TGCCGCCGTCTGTTCACGTTTGGCA
NONE
OsAffx.24329.1.S1_at--99--2491Chr02:11415405..11415531 (24 bp)
AAGGTTATACTTCAAGGCTTGTCAA
LOC_Os02g19540
OsAffx.24329.1.S1_at--105--7791Chr02:11415367..11415391 (25 bp)
GGTCTGGTGGCATAAATACCGGAAT
LOC_Os02g19540
OsAffx.24329.1.S1_at--895--2491Chr02:11415333..11415357 (25 bp)
AACATTGACATCTGTCTCAAGACAG
LOC_Os02g19540
OsAffx.24329.1.S1_at--544--8591Chr02:11415282..11415306 (25 bp)
TGGTCACAAGTTCACTTTGCCCAAT
LOC_Os02g19540
OsAffx.24329.1.S1_at--112--211Chr02:11415256..11415280 (25 bp)
ATTTGTACTGAACGCGAGAGTGCTA
LOC_Os02g19540
OsAffx.24329.1.S1_at--97--2492Chr07:2152479..2152561 (25 bp)
AACAGTAGTTCACACAACACCACAC
NONE
OsAffx.24329.1.S1_at--184--6771Chr02:11414899..11414923 (25 bp)
GTTACAGGTCTTTCGAAGAACCGCA
LOC_Os02g19540
OsAffx.24329.1.S1_at--1014--5371Chr02:11414885..11414909 (25 bp)
GAAGAACCGCACAAAGCTCACTGAA
LOC_Os02g19540
OsAffx.24329.1.S1_at--1102--5111Chr02:11414877..11414901 (25 bp)
GCACAAAGCTCACTGAACCATCTGG
LOC_Os02g19540
Target Sequence 
TACTACCAGCCTAAGCGCCAAGAACGACGCCCTCGCCGCTGGCGTGGTCTCCAGCATCCTCTCCACCCATCCTGGCCCCT
GCCGCCGTCTGTTCACGTTTGGCACCACAGTTATTAAGGTTATACTTCAAGGCTTGTCAATGGGATACAAAAAGGTCTGG
TGGCATAAATACCGGAATCTTAACAAGAACATTGACATCTGTCTCAAGACAGTAGTTTTGGACAATTATCGGGGTATCTG
GTCACAAGTTCACTTTGCCCAATTATTTGTACTGAACGCGAGAGTGCTAGAGTCTATGAAATTTGTGTTTTGCAAGAAAG
CCCACAAAAACAGTAGTTCACACAACACCACACAGCAAATGGGGTTACAGGTCTTTCGAAGAACCGCACAAAGCTCACTG
AACCATCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis