Browse Element(s) Details


Os.53772.2.S1_at

Description gb:AK108666.1
DB_XREF= gi:32993875
TID=Os.53772.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-G04, full insert sequence.
FL= gb:AK108666.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1955011/11lectin receptor kinase 7, putative, expressed
LOC_Os02g196304/11lectin protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19510Os.7757.1.S1_at11/112+11399631..11404041expressed protein
LOC_Os02g19520OsAffx.10900.1.S1_x_at1/112+11404342..11408426transposon protein, putative, Mutator sub-class
LOC_Os02g19530OsAffx.24328.1.S1_at11/112+11411029..11413080lectin receptor kinase 7, putative
LOC_Os02g19540OsAffx.24329.1.S1_at10/112+11414812..11416684F-box domain containing protein
LOC_Os02g19550Os.53772.2.S1_at11/112+11427604..11429893lectin receptor kinase 7, putative, expressed
LOC_Os02g19560NANA2+11433905..11434321NA
LOC_Os02g19570OsAffx.13987.1.S1_at1/112+11435644..11437342retrotransposon protein, putative, unclassified
LOC_Os02g19580OsAffx.10110.3.S1_s_at1/112+11439762..11442342hypothetical protein
LOC_Os02g19600OsAffx.24330.2.S1_at11/112+11445412..11446907hypothetical protein
LOC_Os02g19610Os.54774.1.S1_at1/112+11447927..11451875retrotransposon, putative, centromere-specific
LOC_Os02g19610Os.24648.1.A1_at1/112+11447927..11451875retrotransposon, putative, centromere-specific
LOC_Os02g19610Os.54774.1.S1_x_at1/112+11447927..11451875retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53772.2.S1_at--689--3812Chr02:11472833..11472857 (25 bp)
CTCCTTGAGGTCACCAGTGGGCGAA
LOC_Os02g19630
Os.53772.2.S1_at--16--2891Chr02:11429387..11429411 (25 bp)
AAGGGCATCGACTCCTGCTGACGGA
LOC_Os02g19550
Os.53772.2.S1_at--354--5332Chr02:11473000..11473024 (25 bp)
GAAGTTAGGGCTCTTGTGCTCGCAC
LOC_Os02g19630
Os.53772.2.S1_at--1146--9092Chr02:11473016..11473040 (25 bp)
TGCTCGCACCCAATGTCTAATGTAA
LOC_Os02g19630
Os.53772.2.S1_at--1077--8712Chr02:11473036..11473060 (25 bp)
TGTAAGGCCAACCATGCGACAAGTT
LOC_Os02g19630
Os.53772.2.S1_at--367--1191Chr02:11429573..11429597 (25 bp)
AGTACCTCAACGGAGATATGCCCCT
LOC_Os02g19550
Os.53772.2.S1_at--365--1311Chr02:11429603..11429627 (25 bp)
AGATGTCACCAATGCGCTTTACTTT
LOC_Os02g19550
Os.53772.2.S1_at--263--5411Chr02:11429649..11429673 (25 bp)
GAACCAAGGGTTTGACTCGTCGTTG
LOC_Os02g19550
Os.53772.2.S1_at--629--5252Chr02:11473241..11473265 (25 bp)
GAATCTGTTTCTTTTCACCACATTA
NONE
Os.53772.2.S1_at--979--111Chr02:11429794..11429818 (25 bp)
ATTCTTAGCTGAAGTGCACTCTCTC
LOC_Os02g19550
Os.53772.2.S1_at--733--8692Chr02:11473337..11473361 (25 bp)
TGTGCCTATGCATGTTTCTTTCTTG
NONE
Target Sequence 
CTCCTTGAGGTCACCAGTGGGCGAAGGCCTGTCGAGCAAGACATCGAAGGGCATCGACTCCTGCTGACGGACTGGGTGTT
TGAGAATTGCAGCAAGGAACAGATCCTTGCTGTTATTGACCCAAGACTTAACGGCAACATTAACATTAGTGAAGCAAGTT
TAGTATTGAAGTTAGGGCTCTTGTGCTCGCACCCAATGTCTAATGTAAGGCCAACCATGCGACAAGTTGTGCAGTACCTC
AACGGAGATATGCCCCTCCCAGAGATGTCACCAATGCGCTTTACTTTCAGCCTGTCAGCACTCATGCAGAACCAAGGGTT
TGACTCGTCGTTGAAGAGTTTAGGCACGATTAGTAATCTTTCAATTGGGAGATGACAATGCAAGATGATGCATTTCTGTT
CATAAGTAGAATCTGTTTCTTTTCACCACATTAGGTCAGAGTTTATTGTAGTTATTCTTAGCTGAAGTGCACTCTCTCCA
GCCTTGAGTTGAGAGATTTACTAATGTGCCTATGCATGTTTCTTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53772.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis