Browse Element(s) Details


OsAffx.20424.1.S1_x_at

Description tigr:9638.m02005
TID=OsAffx.20424.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2400011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23940OsAffx.18366.1.S1_at10/1110+11950276..11951125hypothetical protein
LOC_Os10g23940OsAffx.30582.1.S1_s_at5/1110+11950276..11951125hypothetical protein
LOC_Os10g23950Os.26886.2.S1_s_at11/1110+11953905..11954998hypothetical protein
LOC_Os10g23950Os.26886.6.S1_s_at10/1110+11953905..11954998hypothetical protein
LOC_Os10g23950OsAffx.16467.1.S1_at9/1110+11953905..11954998hypothetical protein
LOC_Os10g23950OsAffx.3425.1.S1_at1/1110+11953905..11954998hypothetical protein
LOC_Os10g23960NANA10+11955197..11955646hypothetical protein
LOC_Os10g23970NANA10+11955887..11957020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23980OsAffx.26148.1.S1_at6/1110+11957668..11958957hypothetical protein
LOC_Os10g23980OsAffx.26148.1.S1_x_at4/1110+11957668..11958957hypothetical protein
LOC_Os10g23980OsAffx.31076.1.S1_x_at2/1110+11957668..11958957hypothetical protein
LOC_Os10g23990Os.26886.3.S1_x_at6/1110+11959730..11962544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23990Os.26886.1.S1_x_at6/1110+11959730..11962544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g24000OsAffx.20424.1.S1_x_at11/1110+11965649..11966457hypothetical protein
LOC_Os10g24010OsAffx.20423.2.S1_x_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24010OsAffx.20423.1.S1_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24020Os.51020.1.S1_at10/1110+11976544..11980225transposon protein, putative, unclassified, expressed
LOC_Os10g24030OsAffx.18369.1.S1_at11/1110+11981065..11981416hypothetical protein
LOC_Os10g24040OsAffx.24242.2.S1_at11/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040Os.31929.11.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040OsAffx.24242.5.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24050OsAffx.30518.1.S1_at11/1110+11988785..11990321Ribosome inactivating protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20424.1.S1_x_at--453--5531Chr10:11966382..11966406 (25 bp)
GAAAAAGGTGAAGTTCGTGACGCCG
LOC_Os10g24000
OsAffx.20424.1.S1_x_at--966--4011Chr10:11966356..11966380 (25 bp)
CGTCGGCGCTTGTGCGAGCCTGCTA
LOC_Os10g24000
OsAffx.20424.1.S1_x_at--93--10831Chr10:11966347..11966371 (25 bp)
TTGTGCGAGCCTGCTAGGCGGCGGA
LOC_Os10g24000
OsAffx.20424.1.S1_x_at--867--5791Chr10:11966324..11966348 (25 bp)
GACGCGGACGGGACGACAGTGCCGT
LOC_Os10g24000
OsAffx.20424.1.S1_x_at--124--7711Chr10:11966285..11966309 (25 bp)
GGGTCTCTGGTCTCCGCGGCGGGCG
LOC_Os10g24000
OsAffx.20424.1.S1_x_at--179--2951Chr10:11966228..11966252 (25 bp)
AAGGCGGCGCAGTTGTTGGGAGGCA
LOC_Os10g24000
OsAffx.20424.1.S1_x_at--4--931Chr10:11966208..11966232 (25 bp)
AGGCAGCGGCGCAGTACTCGGGAGG
LOC_Os10g24000
OsAffx.20424.1.S1_x_at--972--4491Chr10:11966176..11966200 (25 bp)
GCCGTGTCAGCGTTGGCGTCGTCCA
LOC_Os10g24000
OsAffx.20424.1.S1_x_at--925--7191Chr10:11965704..11966183 (25 bp)
GTCGTCCACGGCAGGGCCTTGGTAC
LOC_Os10g24000
OsAffx.20424.1.S1_x_at--747--5011Chr10:11965694..11965714 (21 bp)
GCAGGGCCTTGGTACTGGAGCAGTA
LOC_Os10g24000
OsAffx.20424.1.S1_x_at--447--3911Chr10:11965680..11965704 (25 bp)
CTGGAGCAGTAGAGGAGCATGTACC
LOC_Os10g24000
Target Sequence 
GAAAAAGGTGAAGTTCGTGACGCCGGCGTCGGCGCTTGTGCGAGCCTGCTAGGCGGCGGACGCGGACGGGACGACAGTGC
CGTGGGAGAAGGAGCAGGGGTCTCTGGTCTCCGCGGCGGGCGGCGGGAGGTGGTCGGAGAAGCCGGAGCTGAGCAAGGCG
GCGCAGTTGTTGGGAGGCAGCGGCGCAGTACTCGGGAGGCAGCGGCGCCGTGTCAGCGTTGGCGTCGTCCACGGCAGGGC
CTTGGTACTGGAGCAGTAGAGGAGCATGTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20424.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis