Browse Element(s) Details


OsAffx.18369.1.S1_at

Description gb:NM_196187.1
DB_XREF= gi:37533733
TID=OsAffx.18369.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0019N10.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2403011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23970NANA10+11955887..11957020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23980OsAffx.26148.1.S1_at6/1110+11957668..11958957hypothetical protein
LOC_Os10g23980OsAffx.26148.1.S1_x_at4/1110+11957668..11958957hypothetical protein
LOC_Os10g23980OsAffx.31076.1.S1_x_at2/1110+11957668..11958957hypothetical protein
LOC_Os10g23990Os.26886.3.S1_x_at6/1110+11959730..11962544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23990Os.26886.1.S1_x_at6/1110+11959730..11962544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g24000OsAffx.20424.1.S1_x_at11/1110+11965649..11966457hypothetical protein
LOC_Os10g24010OsAffx.20423.2.S1_x_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24010OsAffx.20423.1.S1_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24020Os.51020.1.S1_at10/1110+11976544..11980225transposon protein, putative, unclassified, expressed
LOC_Os10g24030OsAffx.18369.1.S1_at11/1110+11981065..11981416hypothetical protein
LOC_Os10g24040OsAffx.24242.2.S1_at11/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040Os.31929.11.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040OsAffx.24242.5.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24050OsAffx.30518.1.S1_at11/1110+11988785..11990321Ribosome inactivating protein
LOC_Os10g24060OsAffx.20421.1.S1_at11/1110+11993380..11994214hypothetical protein
LOC_Os10g24060OsAffx.15574.1.S1_at1/1110+11993380..11994214hypothetical protein
LOC_Os10g24070Os.14200.2.S1_x_at11/1110+11996060..12005435expressed protein
LOC_Os10g24070Os.14200.1.S1_at10/1110+11996060..12005435expressed protein
LOC_Os10g24080OsAffx.6747.2.S1_x_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.2.S1_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.1.S1_x_at2/1110+12006370..12007211hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18369.1.S1_at--898--8491Chr10:11981107..11981131 (25 bp)
TGGCAAAGCGGTGGGCTCTGGTGCA
LOC_Os10g24030
OsAffx.18369.1.S1_at--218--4551Chr10:11981137..11981161 (25 bp)
GCCCATGCGCCGGTGGAAGTTAGAT
LOC_Os10g24030
OsAffx.18369.1.S1_at--874--8511Chr10:11981150..11981174 (25 bp)
TGGAAGTTAGATGGCATTGGAGCAA
LOC_Os10g24030
OsAffx.18369.1.S1_at--1131--3191Chr10:11981312..11981332 (21 bp)
CAATGTGGGACTGCCGGGTGAAATC
LOC_Os10g24030
OsAffx.18369.1.S1_at--354--8051Chr10:11981315..11981339 (25 bp)
GGACTGCCGGGTGAAATCCCAGTTT
LOC_Os10g24030
OsAffx.18369.1.S1_at--182--7711Chr10:11981323..11981347 (25 bp)
GGGTGAAATCCCAGTTTGCATTCTT
LOC_Os10g24030
OsAffx.18369.1.S1_at--211--7371Chr10:11981325..11981349 (25 bp)
GTGAAATCCCAGTTTGCATTCTTTT
LOC_Os10g24030
OsAffx.18369.1.S1_at--165--10732Chr10:11981338..11981362 (25 bp)
TTGCATTCTTTTTGAGACCTCGACG
LOC_Os10g24030
OsAffx.18369.1.S1_at--568--112Chr10:11981342..11981366 (25 bp)
ATTCTTTTTGAGACCTCGACGGCAG
LOC_Os10g24030
OsAffx.18369.1.S1_at--385--10391Chr10:11981347..11981371 (25 bp)
TTTTGAGACCTCGACGGCAGTGGTG
LOC_Os10g24030
OsAffx.18369.1.S1_at--193--1111Chr10:11981365..11981389 (25 bp)
AGTGGTGGCGGCTCTTTCGTCGCTT
LOC_Os10g24030
Target Sequence 
TGGCAAAGCGGTGGGCTCTGGTGCAGCGGTGCCCATGCGCCGGTGGAAGTTAGATGGCATTGGAGCAATGTGGGACTGCC
GGGTGAAATCCCAGTTTGCATTCTTTTTGAGACCTCGACGGCAGTGGTGGCGGCTCTTTCGTCGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis