Browse Element(s) Details


OsAffx.30518.1.S1_at

Description tigr:9638.m02010
TID=OsAffx.30518.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2405011/11Ribosome inactivating protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24000OsAffx.20424.1.S1_x_at11/1110+11965649..11966457hypothetical protein
LOC_Os10g24010OsAffx.20423.2.S1_x_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24010OsAffx.20423.1.S1_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24020Os.51020.1.S1_at10/1110+11976544..11980225transposon protein, putative, unclassified, expressed
LOC_Os10g24030OsAffx.18369.1.S1_at11/1110+11981065..11981416hypothetical protein
LOC_Os10g24040OsAffx.24242.2.S1_at11/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040Os.31929.11.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040OsAffx.24242.5.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24050OsAffx.30518.1.S1_at11/1110+11988785..11990321Ribosome inactivating protein
LOC_Os10g24060OsAffx.20421.1.S1_at11/1110+11993380..11994214hypothetical protein
LOC_Os10g24060OsAffx.15574.1.S1_at1/1110+11993380..11994214hypothetical protein
LOC_Os10g24070Os.14200.2.S1_x_at11/1110+11996060..12005435expressed protein
LOC_Os10g24070Os.14200.1.S1_at10/1110+11996060..12005435expressed protein
LOC_Os10g24080OsAffx.6747.2.S1_x_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.2.S1_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.1.S1_x_at2/1110+12006370..12007211hypothetical protein
LOC_Os10g24090NANA10+12011279..12011986hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30518.1.S1_at--924--2791Chr10:11989755..11989779 (25 bp)
AAGATGCATCTTGTCTGCCGGAAGC
LOC_Os10g24050
OsAffx.30518.1.S1_at--1059--2651Chr10:11989776..11989800 (25 bp)
AAGCCTCGCATCGATAGGTGCACGA
LOC_Os10g24050
OsAffx.30518.1.S1_at--484--6491Chr10:11989799..11989823 (25 bp)
GATAGCCCTTAGATTCGATACCATA
LOC_Os10g24050
OsAffx.30518.1.S1_at--524--9851Chr10:11989860..11989884 (25 bp)
TACAGCATGTACTCTGGGTTCCCAA
LOC_Os10g24050
OsAffx.30518.1.S1_at--1039--1711Chr10:11989893..11989917 (25 bp)
ACCAGACTCCCCTTTGATGAGGATT
LOC_Os10g24050
OsAffx.30518.1.S1_at--958--691Chr10:11989909..11989933 (25 bp)
ATGAGGATTACTTTGCTCTTGCCGG
LOC_Os10g24050
OsAffx.30518.1.S1_at--1105--2151Chr10:11989993..11990017 (25 bp)
ACACCCTTGCTACATTCGATGGAGA
LOC_Os10g24050
OsAffx.30518.1.S1_at--911--7951Chr10:11990056..11990080 (25 bp)
GGATAATGTTCTCTGAAGCCCTTAA
LOC_Os10g24050
OsAffx.30518.1.S1_at--826--7291Chr10:11990091..11990115 (25 bp)
GTGCGTTTGGCCTTTTCTAGAGATT
LOC_Os10g24050
OsAffx.30518.1.S1_at--736--5471Chr10:11990201..11990225 (25 bp)
GAACTCTGGCTACGCGTACTGGAAA
LOC_Os10g24050
OsAffx.30518.1.S1_at--759--8511Chr10:11990239..11990263 (25 bp)
TGGAAAACTGCCTTGTGAACACCCC
LOC_Os10g24050
Target Sequence 
AAGATGCATCTTGTCTGCCGGAAGCCTCGCATCGATAGGTGCACGATAGCCCTTAGATTCGATACCATATATCTGATGGC
ATTCAGCACTAATCAGAACCAGTGGTACAGCATGTACTCTGGGTTCCCAATTGCTCACACCAGACTCCCCTTTGATGAGG
ATTACTTTGCTCTTGCCGGGGGCACAAGTAATCTGGTTACTGTGCCATTGGGGAAAGAATCTGCGCTGGATGCAATACAC
ACCCTTGCTACATTCGATGGAGAAAGTGCCAATGACTTGAAGATACCGCTGGTGAAGTTGAGGATAATGTTCTCTGAAGC
CCTTAAGCTAAAGCCCGTGCGTTTGGCCTTTTCTAGAGATTGGAACGAGGAAACCCACATCACCAAACAAGACGCGAACT
ACATTGGATGTTGGGGCCTAATGTCATTCAATCTTGTAGCCTGGAAGAACTCTGGCTACGCGTACTGGAAAAGCGAGAAG
AAATTGGAAAACTGCCTTGTGAACACCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis