Browse Element(s) Details


Os.51020.1.S1_at

Description gb:AK060203.1
DB_XREF= gi:32970221
TID=Os.51020.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-H01, full insert sequence.
FL= gb:AK060203.1 gb:AK100608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2402010/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23950Os.26886.2.S1_s_at11/1110+11953905..11954998hypothetical protein
LOC_Os10g23950Os.26886.6.S1_s_at10/1110+11953905..11954998hypothetical protein
LOC_Os10g23950OsAffx.16467.1.S1_at9/1110+11953905..11954998hypothetical protein
LOC_Os10g23950OsAffx.3425.1.S1_at1/1110+11953905..11954998hypothetical protein
LOC_Os10g23960NANA10+11955197..11955646hypothetical protein
LOC_Os10g23970NANA10+11955887..11957020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23980OsAffx.26148.1.S1_at6/1110+11957668..11958957hypothetical protein
LOC_Os10g23980OsAffx.26148.1.S1_x_at4/1110+11957668..11958957hypothetical protein
LOC_Os10g23980OsAffx.31076.1.S1_x_at2/1110+11957668..11958957hypothetical protein
LOC_Os10g23990Os.26886.3.S1_x_at6/1110+11959730..11962544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23990Os.26886.1.S1_x_at6/1110+11959730..11962544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g24000OsAffx.20424.1.S1_x_at11/1110+11965649..11966457hypothetical protein
LOC_Os10g24010OsAffx.20423.2.S1_x_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24010OsAffx.20423.1.S1_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24020Os.51020.1.S1_at10/1110+11976544..11980225transposon protein, putative, unclassified, expressed
LOC_Os10g24030OsAffx.18369.1.S1_at11/1110+11981065..11981416hypothetical protein
LOC_Os10g24040OsAffx.24242.2.S1_at11/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040Os.31929.11.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040OsAffx.24242.5.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24050OsAffx.30518.1.S1_at11/1110+11988785..11990321Ribosome inactivating protein
LOC_Os10g24060OsAffx.20421.1.S1_at11/1110+11993380..11994214hypothetical protein
LOC_Os10g24060OsAffx.15574.1.S1_at1/1110+11993380..11994214hypothetical protein
LOC_Os10g24070Os.14200.2.S1_x_at11/1110+11996060..12005435expressed protein
LOC_Os10g24070Os.14200.1.S1_at10/1110+11996060..12005435expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51020.1.S1_at--698--6931Chr10:11977116..11977140 (25 bp)
GTAGGGATGATATCGTTGCACGCAA
LOC_Os10g24020
Os.51020.1.S1_at--1012--7291Chr10:11977086..11977110 (25 bp)
GTGCGGGCACATCAGCTGAAGTCAT
LOC_Os10g24020
Os.51020.1.S1_at--188--5331Chr10:11977069..11977093 (25 bp)
GAAGTCATAAGCCAAGAACCACCAC
LOC_Os10g24020
Os.51020.1.S1_at--150--2751Chr10:11976979..11977003 (25 bp)
AAGAAGCTCTGTACTAGGGTGTGCA
LOC_Os10g24020
Os.51020.1.S1_at--264--7511Chr10:11976948..11976972 (25 bp)
GTGGACTGAGGGATGGCCATTACAC
LOC_Os10g24020
Os.51020.1.S1_at--1016--10411Chr10:11976929..11976953 (25 bp)
TTACACAACTACCTGCCCAAAAAAT
LOC_Os10g24020
Os.51020.1.S1_at--495--3491Chr10:11976812..11976836 (25 bp)
CATGGCCTGTGTAGGTAGGAGCCTT
LOC_Os10g24020
Os.51020.1.S1_at--636--1071Chr10:11976772..11976796 (25 bp)
AGGGAGGGCATTACTGAACAGGACA
LOC_Os10g24020
Os.51020.1.S1_at--819--5231Chr10:11976668..11976692 (25 bp)
GAATACAGCCGATGTCTATAGCCAA
LOC_Os10g24020
Os.51020.1.S1_at--323--1971Chr10:11976582..11976606 (25 bp)
ACTGTTGGCCATTTGATTGTTGCTG
LOC_Os10g24020
Os.51020.1.S1_at--1103--10131Chr10:11976544..11976568 (25 bp)
TATGCGCGAGGCCAATTGCTGACCG
NONE
Target Sequence 
GTAGGGATGATATCGTTGCACGCAACAATGGTGCGGGCACATCAGCTGAAGTCATAAGCCAAGAACCACCACCCAAACCA
AAGACTAAAGAGCGGACAGTAGGTCCAGAAGAGAATGTATCACTTGGTGCAAGGGGGAAGAAGCTCTGTACTAGGGTGTG
CAGCTGGTGTGGACTGAGGGATGGCCATTACACAACTACCTGCCCAAAAAATCCCGCAAACTTCGAAAAGGTAAGGAAGG
CAATGAGCAGGGGTAGAGGGAGGAGAGGGAGACCACGNGGAAGTGGAAGGGGTGGCGGTCGCGGCATGGCCTGTGTAGGT
AGGAGCCTTATGGATGAATTGGAGAGGGAGGGCATTACTGAACAGGACAGCAACGACGACATGGTAGAATCTGATGCGGA
ATGAGCTGCAATGCAGTGATATGTCGTAGTGGAATAGGTTTCAAGGCTGAATACAGCCGATGTCTATAGCCAAAACTGTT
TGGATCAATTTCAGTAACGTGTGTTTGAAAATTTGGATGTTAGTGATATGGTGTACTGTTGGCCATTTGATTGTTGCTGG
AGATTCAAAATATATGCGCGAGGCCAATTGCTGACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis