Browse Element(s) Details


Os.7312.1.S1_a_at

Description gb:AK099674.1
DB_XREF= gi:32984883
TID=Os.7312.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU100718(C12270),C26408(C12270)~unknown protein (P0597G07.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069F21, full insert sequence.
FL= gb:AK099674.1 gb:AK062111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4903010/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48989NANA7+29327175..29327558NA
LOC_Os07g49000Os.34478.2.S1_x_at11/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49000Os.34478.1.S1_at11/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49000OsAffx.26408.1.S1_x_at2/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49010Os.27285.1.S1_at11/117+29341295..29349143BRCA1 C Terminus domain containing protein, expressed
LOC_Os07g49010Os.23591.1.A1_at1/117+29341295..29349143BRCA1 C Terminus domain containing protein, expressed
LOC_Os07g49020NANA7+29349956..29350222expressed protein
LOC_Os07g49030Os.7312.1.S1_a_at10/117+29351351..29355429PHD-finger family protein, expressed
LOC_Os07g49040Os.14932.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55724.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55711.1.S1_at10/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.51367.1.S2_at1/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49050OsAffx.28962.1.S1_at11/117+29368854..29370005hypothetical protein
LOC_Os07g49060NANA7+29371026..29371406hypothetical protein
LOC_Os07g49070OsAffx.10352.1.S1_at11/117+29374568..29379279hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7312.1.S1_a_at--1134--5431Chr07:29352541..29352565 (25 bp)
GAACCCATCATGTTCCAGGGATAGT
LOC_Os07g49030
Os.7312.1.S1_a_at--351--6091Chr07:29352499..29352523 (25 bp)
GAGTAGCTCATCTTTTGTTCAGCCA
LOC_Os07g49030
Os.7312.1.S1_a_at--1029--7691Chr07:29352469..29352493 (25 bp)
GGGTCTTATTGAACGCACCTATGGG
LOC_Os07g49030
Os.7312.1.S1_a_at--837--2391Chr07:29352375..29352399 (25 bp)
AAACTAATGTGTGCTCAGTCCCCAT
LOC_Os07g49030
Os.7312.1.S1_a_at--63--1151NONE
AGTCCCCATTGGGTCAATCTGATTT
NONE
Os.7312.1.S1_a_at--445--5151Chr07:29351700..29351724 (25 bp)
GCAACACACACTATCTTAGCACTGT
LOC_Os07g49030
Os.7312.1.S1_a_at--1108--1491Chr07:29351683..29351707 (25 bp)
AGCACTGTCTGGGATTGCACACAAC
LOC_Os07g49030
Os.7312.1.S1_a_at--631--7811Chr07:29351598..29351622 (25 bp)
GGTCAGGAACCAGCATTTCTCATGA
LOC_Os07g49030
Os.7312.1.S1_a_at--1053--691Chr07:29351577..29351601 (25 bp)
ATGAGAACCTGCTGCTCATCATGCT
LOC_Os07g49030
Os.7312.1.S1_a_at--761--411Chr07:29351560..29351584 (25 bp)
ATCATGCTTCAACTCCTTTGTTGGT
LOC_Os07g49030
Os.7312.1.S1_a_at--772--7491Chr07:29351537..29351561 (25 bp)
GTGGTGTCGTCAGTTACATTGCAGA
LOC_Os07g49030
Target Sequence 
GAACCCATCATGTTCCAGGGATAGTTCTATGCAGAACCAGCAGAGTAGCTCATCTTTTGTTCAGCCAGCAAGGGGTCTTA
TTGAACGCACCTATGGGGGTGGAAGCAATTTCCAACAAACAGAAGGTGCTAAGGAACAGCTGATTCCTATTGTCAAGAGG
AACCTCAAACTAATGTGTGCTCAGTCCCCATTGGGTCAATCTGATTTCAAGAATGTTGCACGGAGAGCAACACACACTAT
CTTAGCACTGTCTGGGATTGCACACAACGAGGATTTTGTNGTCAGTACGCCTCATCCTCTCCCTAGCCATTGTAACCATG
CCTGTGATGGTCAGGAACCAGCATTTCTCATGAGAACCTGCTGCTCATCATGCTTCAACTCCTTTGTTGGTGGTGTCGTC
AGTTACATTGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7312.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis