Browse Element(s) Details


Os.23591.1.A1_at

Description gb:CA760083
DB_XREF= gi:25804122
DB_XREF=BR060013B10C07.ab1
CLONE=BR060013B10C07.ab1
TID=Os.23591.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23591 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5967010/11expressed protein
LOC_Os07g490101/11BRCA1 C Terminus domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59630Os.23590.1.A1_at10/111+34812128..34816646Exostosin family protein, expressed
LOC_Os01g59640OsAffx.9467.1.S1_at11/111+34817654..34819545No apical meristem protein, expressed
LOC_Os01g59660Os.2698.3.S1_x_at11/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59660OsAffx.30142.1.S1_x_at1/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59670OsAffx.9464.2.S1_x_at11/111+34840966..34847732expressed protein
LOC_Os01g59670Os.23591.1.A1_at10/111+34840966..34847732expressed protein
LOC_Os01g59680Os.54928.1.S1_at11/111+34851347..34853377Harpin-induced protein 1 containing protein, expressed
LOC_Os01g59690Os.11125.1.S1_a_at11/111+34858623..34860620F-box family protein, putative, expressed
LOC_Os01g59700OsAffx.11667.1.S1_at11/111+34863722..34864295hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23591.1.A1_at--260--5491Chr01:34847270..34847294 (25 bp)
GAACAGCACTGAGTGATGTCACAGA
LOC_Os01g59670
Os.23591.1.A1_at--622--8051Chr01:34847328..34847352 (25 bp)
GGAGATGTTACCAAATGAGCGCAAA
LOC_Os01g59670
Os.23591.1.A1_at--310--9791Chr01:34847380..34847404 (25 bp)
TAACCGTGGGTTCAACCGATGAAGC
LOC_Os01g59670
Os.23591.1.A1_at--591--6311Chr01:34847397..34847421 (25 bp)
GATGAAGCACCCCTTTTAGTTCCAG
LOC_Os01g59670
Os.23591.1.A1_at--966--7691Chr01:34847422..34847446 (25 bp)
GGGTCTTTGGTCTATACTTCCATTC
LOC_Os01g59670
Os.23591.1.A1_at--933--7131Chr01:34847431..34847455 (25 bp)
GTCTATACTTCCATTCCGCAAAATA
LOC_Os01g59670
Os.23591.1.A1_at--782--10371NONE
TTTTCTCCTGTTTGAGGGTTTGATG
NONE
Os.23591.1.A1_at--266--10372Chr01:34847533..34847557 (25 bp)
TTTTTCTCCTTAGTTTTCCTATCAT
LOC_Os01g59670
Os.23591.1.A1_at--957--10291Chr01:34847547..34847571 (25 bp)
TTTCCTATCATTTGGCTGTAGTAGC
LOC_Os01g59670
Os.23591.1.A1_at--213--5171Chr01:34847570..34847594 (25 bp)
GCAAGAGGTGTTTTTTCCCTGGCGG
LOC_Os01g59670
Os.23591.1.A1_at--347--9311Chr01:34847585..34847609 (25 bp)
TCCCTGGCGGTATGGTGTGGTTACA
LOC_Os01g59670
Target Sequence 
GAACAGCACTGAGTGATGTCACAGAATTGCTAGGAAGGAAAGAAAGAATTTCATCGGAGGAGATGTTACCAAATGAGCGC
AAATCTTTCTTCATTTAAACACGAAGAGGTTAACCGTGGGTTCAACCGATGAAGCACCCCTTTTAGTTCCAGGGGTCTTT
GGTCTATACTTCCATTCCGCAAAATACAAAGTTTTGCTGTAGATTTGTGGATGCATTTTTTTTCTCCTGTTTGAGGGTTT
GATGGTTTGGTATTGAATTTATTTTTTTCTCCTTAGTTTTCCTATCATTTGGCTGTAGTAGCAAGAGGTGTTTTTTCCCT
GGCGGTATGGTGTGGTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23591.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis