Browse Element(s) Details


Os.54928.1.S1_at

Description gb:AK107118.1
DB_XREF= gi:32992327
TID=Os.54928.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B02, full insert sequence.
FL= gb:AK107118.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5968011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59660Os.2698.3.S1_x_at11/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59660OsAffx.30142.1.S1_x_at1/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59670OsAffx.9464.2.S1_x_at11/111+34840966..34847732expressed protein
LOC_Os01g59670Os.23591.1.A1_at10/111+34840966..34847732expressed protein
LOC_Os01g59680Os.54928.1.S1_at11/111+34851347..34853377Harpin-induced protein 1 containing protein, expressed
LOC_Os01g59690Os.11125.1.S1_a_at11/111+34858623..34860620F-box family protein, putative, expressed
LOC_Os01g59700OsAffx.11667.1.S1_at11/111+34863722..34864295hypothetical protein
LOC_Os01g59710OsAffx.21655.1.S1_at11/111+34872822..34874488hypothetical protein
LOC_Os01g59720OsAffx.11669.1.S1_at11/111+34874931..34876166hypothetical protein
LOC_Os01g59730Os.18206.1.S1_at11/111+34877208..3487948460S ribosomal protein L30, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0009863biological_processsalicylic acid mediated signaling pathway
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54928.1.S1_at--464--8531Chr01:34852973..34852997 (25 bp)
TGGACGTCAAGGTGCCCGTGCGCCT
LOC_Os01g59680
Os.54928.1.S1_at--560--5811Chr01:34853074..34853098 (25 bp)
GACGCCAAGGTGGTGTCCAAGTCGT
LOC_Os01g59680
Os.54928.1.S1_at--69--8231Chr01:34853087..34853111 (25 bp)
TGTCCAAGTCGTGCCGCGTGAAGGC
LOC_Os01g59680
Os.54928.1.S1_at--1054--4611Chr01:34853112..34853136 (25 bp)
GCGGTTCCTCTTCTGGAAGGACTGA
LOC_Os01g59680
Os.54928.1.S1_at--789--3511Chr01:34853190..34853214 (25 bp)
CATGCAGTTTTTTGGCACCAATGGA
LOC_Os01g59680
Os.54928.1.S1_at--57--5091Chr01:34853204..34853228 (25 bp)
GCACCAATGGATTCTTGCTGTGCTT
LOC_Os01g59680
Os.54928.1.S1_at--104--4731Chr01:34853220..34853244 (25 bp)
GCTGTGCTTTTTCAATGATGTTTTA
LOC_Os01g59680
Os.54928.1.S1_at--355--7071Chr01:34853247..34853271 (25 bp)
GTAATCATCATCTGTTCGTGGGTTT
LOC_Os01g59680
Os.54928.1.S1_at--514--7071Chr01:34853278..34853302 (25 bp)
GTAATGTTGATCATCCTAATGCCAA
LOC_Os01g59680
Os.54928.1.S1_at--586--6631Chr01:34853315..34853339 (25 bp)
GTTGTGATGTTCATGAGTTGCACCT
LOC_Os01g59680
Os.54928.1.S1_at--1125--6051Chr01:34853329..34853353 (25 bp)
GAGTTGCACCTATGTGTTCTTTACA
LOC_Os01g59680
Target Sequence 
TGGACGTCAAGGTGCCCGTGCGCCTGCAGGTCGGCGGCGTGAGGACGTGGGCCGTGCCGGTGAGGGTGCGGTGCGCGGTG
GTCGTGGACAGGCTCGCCGCCGACGCCAAGGTGGTGTCCAAGTCGTGCCGCGTGAAGGCGCGGTTCCTCTTCTGGAAGGA
CTGATGAGGAAGCAAGAACAGTGGAGTAATCGGTTGATTAAATTAGGAGAAGAAGAACATGCAGTTTTTTGGCACCAATG
GATTCTTGCTGTGCTTTTTCAATGATGTTTTACTGTAATCATCATCTGTTCGTGGGTTTGATAGAGTAATGTTGATCATC
CTAATGCCAAAATCGTGTTGTAGTTGTGATGTTCATGAGTTGCACCTATGTGTTCTTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis