Browse Element(s) Details


OsAffx.11667.1.S1_at

Description tigr:9629.m05867
TID=OsAffx.11667.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5970011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59660Os.2698.3.S1_x_at11/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59660OsAffx.30142.1.S1_x_at1/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59670OsAffx.9464.2.S1_x_at11/111+34840966..34847732expressed protein
LOC_Os01g59670Os.23591.1.A1_at10/111+34840966..34847732expressed protein
LOC_Os01g59680Os.54928.1.S1_at11/111+34851347..34853377Harpin-induced protein 1 containing protein, expressed
LOC_Os01g59690Os.11125.1.S1_a_at11/111+34858623..34860620F-box family protein, putative, expressed
LOC_Os01g59700OsAffx.11667.1.S1_at11/111+34863722..34864295hypothetical protein
LOC_Os01g59710OsAffx.21655.1.S1_at11/111+34872822..34874488hypothetical protein
LOC_Os01g59720OsAffx.11669.1.S1_at11/111+34874931..34876166hypothetical protein
LOC_Os01g59730Os.18206.1.S1_at11/111+34877208..3487948460S ribosomal protein L30, putative, expressed
LOC_Os01g59740Os.7103.1.S1_at11/111+34885058..34886784expressed protein
LOC_Os01g59750OsAffx.23859.1.S1_at10/111+34887517..3489115214 kDa zinc-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11667.1.S1_at--357--10691Chr01:34863753..34863777 (25 bp)
TTGCCAAGCTAACAGTGCATCCTAC
LOC_Os01g59700
OsAffx.11667.1.S1_at--1030--9411Chr01:34863840..34863864 (25 bp)
TCGTGCACTCTCTGGATCCTGAGTT
LOC_Os01g59700
OsAffx.11667.1.S1_at--966--9671Chr01:34863874..34863898 (25 bp)
TCACCTCAAGTTAGCATTTCTTCCT
LOC_Os01g59700
OsAffx.11667.1.S1_at--975--7551Chr01:34863929..34863953 (25 bp)
GGGCCTAATGCAGTCGTGGTATTAC
LOC_Os01g59700
OsAffx.11667.1.S1_at--671--8091Chr01:34863960..34863984 (25 bp)
GGACCAATGCACACCAAGCTCTAAA
LOC_Os01g59700
OsAffx.11667.1.S1_at--770--7871Chr01:34863999..34864023 (25 bp)
GGTTTAAGTCACAGGGCATGCATCT
LOC_Os01g59700
OsAffx.11667.1.S1_at--880--631Chr01:34864016..34864040 (25 bp)
ATGCATCTTAGGGTTGTTTCGGCTA
LOC_Os01g59700
OsAffx.11667.1.S1_at--71--9451Chr01:34864034..34864058 (25 bp)
TCGGCTAAACATCTTGACACTGCTC
LOC_Os01g59700
OsAffx.11667.1.S1_at--760--3331Chr01:34864051..34864075 (25 bp)
CACTGCTCACAGTGTGGTCCTAAAG
LOC_Os01g59700
OsAffx.11667.1.S1_at--40--2791Chr01:34864206..34864230 (25 bp)
AAGAGCACACTTTTCTCGATGTCAT
LOC_Os01g59700
OsAffx.11667.1.S1_at--280--9511Chr01:34864219..34864243 (25 bp)
TCTCGATGTCATTGCCTGTCAAGAA
LOC_Os01g59700
Target Sequence 
TTGCCAAGCTAACAGTGCATCCTACCAGCGACGTCGACCTATCTTTCCTCAACCTCCTAGGTGCCGACACCACACTACGA
ACCCTCCTCGTGCACTCTCTGGATCCTGAGTTTGATTATATTCACCTCAAGTTAGCATTTCTTCCTTATGGAGAGCTACC
ATTAGTTGCTATTGAGGGGCCTAATGCAGTCGTGGTATTACAAGATTGGACCAATGCACACCAAGCTCTAAAAGACAATG
ATGGCTGGTTTAAGTCACAGGGCATGCATCTTAGGGTTGTTTCGGCTAAACATCTTGACACTGCTCACAGTGTGGTCCTA
AAGGAACTTAAGAAGCCAACTGGGCAACAGGAAGCTCGAGATGTGACTAATCAACTGGAACTTTTCAATGAATTAAAGAG
CACACTTTTCTCGATGTCATTGCCTGTCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis