Browse Element(s) Details


Os.11125.1.S1_a_at

Description gb:AK072651.1
DB_XREF= gi:32982674
TID=Os.11125.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0425G02.20 (P0425G02.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131F07, full insert sequence.
FL= gb:AK104334.1 gb:AK072651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5969011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59660Os.2698.3.S1_x_at11/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59660OsAffx.30142.1.S1_x_at1/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59670OsAffx.9464.2.S1_x_at11/111+34840966..34847732expressed protein
LOC_Os01g59670Os.23591.1.A1_at10/111+34840966..34847732expressed protein
LOC_Os01g59680Os.54928.1.S1_at11/111+34851347..34853377Harpin-induced protein 1 containing protein, expressed
LOC_Os01g59690Os.11125.1.S1_a_at11/111+34858623..34860620F-box family protein, putative, expressed
LOC_Os01g59700OsAffx.11667.1.S1_at11/111+34863722..34864295hypothetical protein
LOC_Os01g59710OsAffx.21655.1.S1_at11/111+34872822..34874488hypothetical protein
LOC_Os01g59720OsAffx.11669.1.S1_at11/111+34874931..34876166hypothetical protein
LOC_Os01g59730Os.18206.1.S1_at11/111+34877208..3487948460S ribosomal protein L30, putative, expressed
LOC_Os01g59740Os.7103.1.S1_at11/111+34885058..34886784expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11125.1.S1_a_at--879--5971Chr01:34860082..34860106 (25 bp)
GAGAAAACAAACTGTCAGCCTCAGC
LOC_Os01g59690
Os.11125.1.S1_a_at--1004--671Chr01:34860183..34860207 (25 bp)
ATGACATTGCAAGGTGCCACCCTGG
LOC_Os01g59690
Os.11125.1.S1_a_at--386--2071Chr01:34860186..34860210 (25 bp)
ACATTGCAAGGTGCCACCCTGGTTG
LOC_Os01g59690
Os.11125.1.S1_a_at--422--4271Chr01:34860203..34860227 (25 bp)
CCTGGTTGTGATCAAACCCTCCAAT
LOC_Os01g59690
Os.11125.1.S1_a_at--375--8671Chr01:34860209..34860233 (25 bp)
TGTGATCAAACCCTCCAATGATGGA
LOC_Os01g59690
Os.11125.1.S1_a_at--759--7491Chr01:34860241..34860265 (25 bp)
GTGGTCACAGCAGTCGGAAGGAAAC
LOC_Os01g59690
Os.11125.1.S1_a_at--984--2531Chr01:34860263..34860287 (25 bp)
AACTGAAGCTTTTGTTTCAAGTGCA
LOC_Os01g59690
Os.11125.1.S1_a_at--403--2851Chr01:34860281..34860305 (25 bp)
AAGTGCATTCGATGAACCTTTCAGA
LOC_Os01g59690
Os.11125.1.S1_a_at--178--10631Chr01:34860288..34860312 (25 bp)
TTCGATGAACCTTTCAGATTTGCTG
LOC_Os01g59690
Os.11125.1.S1_a_at--439--8391Chr01:34860317..34860341 (25 bp)
GGCGCTGATGAAGAGACGAACATAT
LOC_Os01g59690
Os.11125.1.S1_a_at--296--1351Chr01:34860328..34860352 (25 bp)
AGAGACGAACATATCTACTGGAGAT
LOC_Os01g59690
Target Sequence 
GAGAAAACAAACTGTCAGCCTCAGCATGTTCCAATAGAACTCAGGTCCCAGCCTGCAACATGAAGCTGAAATATGCCCCA
TACCTTGAGCTACCTGGTGGCATGACATTGCAAGGTGCCACCCTGGTTGTGATCAAACCCTCCAATGATGGAGGCAGTGG
TGGTCACAGCAGTCGGAAGGAAACTGAAGCTTTTGTTTCAAGTGCATTCGATGAACCTTTCAGATTTGCTGTGAAGGCGC
TGATGAAGAGACGAACATATCTACTGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11125.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis