Browse Element(s) Details


Os.7103.1.S1_at

Description gb:AK121582.1
DB_XREF= gi:37991205
TID=Os.7103.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0425G02.25 (P0425G02.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037D14, full insert sequence.
FL= gb:AK121582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5974011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59690Os.11125.1.S1_a_at11/111+34858623..34860620F-box family protein, putative, expressed
LOC_Os01g59700OsAffx.11667.1.S1_at11/111+34863722..34864295hypothetical protein
LOC_Os01g59710OsAffx.21655.1.S1_at11/111+34872822..34874488hypothetical protein
LOC_Os01g59720OsAffx.11669.1.S1_at11/111+34874931..34876166hypothetical protein
LOC_Os01g59730Os.18206.1.S1_at11/111+34877208..3487948460S ribosomal protein L30, putative, expressed
LOC_Os01g59740Os.7103.1.S1_at11/111+34885058..34886784expressed protein
LOC_Os01g59750OsAffx.23859.1.S1_at10/111+34887517..3489115214 kDa zinc-binding protein, putative, expressed
LOC_Os01g59760Os.42200.1.S1_at10/111+34892143..34895139bZIP transcription factor family protein, expressed
LOC_Os01g59770NANA1+34896958..34897269hypothetical protein
LOC_Os01g59780OsAffx.21654.1.S1_at11/111+34901681..34904452AP2 domain containing protein, expressed
LOC_Os01g59780OsAffx.21654.1.S1_x_at11/111+34901681..34904452AP2 domain containing protein, expressed
LOC_Os01g59790Os.12144.1.S1_a_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59790Os.12144.2.S1_x_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59800Os.21368.1.A1_at11/111+34910742..34913959Vacuolar protein sorting 36 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0009706cellular_componentchloroplast inner membrane
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7103.1.S1_at--224--3651Chr01:34885533..34885557 (25 bp)
CTTCGTTTGCGGCTTCTTGGACATG
LOC_Os01g59740
Os.7103.1.S1_at--695--3491Chr01:34885512..34885536 (25 bp)
CATGGGCCAAGAAAGCTCTGTAGAT
LOC_Os01g59740
Os.7103.1.S1_at--810--9411Chr01:34885496..34885520 (25 bp)
TCTGTAGATGATAAGCCGGTTGGCT
LOC_Os01g59740
Os.7103.1.S1_at--306--8791Chr01:34885441..34885465 (25 bp)
TGTTCAGTCCATCTTTGGTGTTCTT
LOC_Os01g59740
Os.7103.1.S1_at--467--9471Chr01:34885409..34885433 (25 bp)
TCTGTCGACATGCTTAGTTGATCTT
LOC_Os01g59740
Os.7103.1.S1_at--826--10671Chr01:34885320..34885344 (25 bp)
TTGCGCGCGGTAACTTCAATTGCTT
LOC_Os01g59740
Os.7103.1.S1_at--769--6851Chr01:34885294..34885318 (25 bp)
GTTTGCATGCAATTCTGTGATCCGA
LOC_Os01g59740
Os.7103.1.S1_at--1100--7391Chr01:34885278..34885302 (25 bp)
GTGATCCGATCAGACCAACATTGTA
LOC_Os01g59740
Os.7103.1.S1_at--851--10431Chr01:34885134..34885158 (25 bp)
TTATGTCTGCACAGCCAGAACCAGA
LOC_Os01g59740
Os.7103.1.S1_at--881--1431Chr01:34885118..34885142 (25 bp)
AGAACCAGACTTACCTCAGGTCTTC
LOC_Os01g59740
Os.7103.1.S1_at--841--3871Chr01:34885091..34885115 (25 bp)
CTGTGGCAATTCGAGTTTTACCTTT
LOC_Os01g59740
Target Sequence 
CTTCGTTTGCGGCTTCTTGGACATGGGCCAAGAAAGCTCTGTAGATGATAAGCCGGTTGGCTTGGCAATAAGGAGTGAGG
CTTGAAACAATTTGTTCAGTCCATCTTTGGTGTTCTTGGTTTAATCTGTCGACATGCTTAGTTGATCTTAGAATAAAGCT
TTACCTTTTTTCTGNTTGCTCGNTTTTGGTCACTGGCCTAACCGGGGGGATTACTTTGCGCGCGGTAACTTCAATTGCTT
TGTTTGCATGCAATTCTGTGATCCGATCAGACCAACATTGTAGATGTAAGGACTGAACAAATGAAAATCTAAGCGTTGGG
GGGTTAGTGATGTACAACTCAGATAAAATTCTCTAGTGTTTGCATAAGTGAATTGCTGTTTGTGTGTTTAAGTGCAGATA
ATTATGTCTGCACAGCCAGAACCAGACTTACCTCAGGTCTTCCACTGTGGCAATTCGAGTTTTACCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis