Browse Element(s) Details


OsAffx.21654.1.S1_x_at

Description tigr:9629.m05875
TID=OsAffx.21654.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5978011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59730Os.18206.1.S1_at11/111+34877208..3487948460S ribosomal protein L30, putative, expressed
LOC_Os01g59740Os.7103.1.S1_at11/111+34885058..34886784expressed protein
LOC_Os01g59750OsAffx.23859.1.S1_at10/111+34887517..3489115214 kDa zinc-binding protein, putative, expressed
LOC_Os01g59760Os.42200.1.S1_at10/111+34892143..34895139bZIP transcription factor family protein, expressed
LOC_Os01g59770NANA1+34896958..34897269hypothetical protein
LOC_Os01g59780OsAffx.21654.1.S1_at11/111+34901681..34904452AP2 domain containing protein, expressed
LOC_Os01g59780OsAffx.21654.1.S1_x_at11/111+34901681..34904452AP2 domain containing protein, expressed
LOC_Os01g59790Os.12144.1.S1_a_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59790Os.12144.2.S1_x_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59800Os.21368.1.A1_at11/111+34910742..34913959Vacuolar protein sorting 36 containing protein, expressed
LOC_Os01g59819Os.55138.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819OsAffx.20707.2.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.55476.1.S1_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.51558.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006109biological_processregulation of carbohydrate metabolism
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008610biological_processlipid biosynthesis
GO:0009744biological_processresponse to sucrose stimulus
GO:0009887biological_processorgan morphogenesis
GO:0019432biological_processtriacylglycerol biosynthesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21654.1.S1_x_at--407--7251Chr01:34903936..34903960 (25 bp)
GTCCGTCTGCAAGACCGAGCCGGAG
LOC_Os01g59780
OsAffx.21654.1.S1_x_at--733--8391Chr01:34903981..34904005 (25 bp)
GGCGCCTCCAGGCTCGGAGTCACTT
LOC_Os01g59780
OsAffx.21654.1.S1_x_at--573--8031Chr01:34903996..34904020 (25 bp)
GGAGTCACTTCTCCGGCCCAAGATG
LOC_Os01g59780
OsAffx.21654.1.S1_x_at--884--8391Chr01:34904010..34904034 (25 bp)
GGCCCAAGATGGAGCCCTGCGACGA
LOC_Os01g59780
OsAffx.21654.1.S1_x_at--1141--831Chr01:34904018..34904042 (25 bp)
ATGGAGCCCTGCGACGACTGGGAGC
LOC_Os01g59780
OsAffx.21654.1.S1_x_at--76--10291Chr01:34904052..34904076 (25 bp)
TTTGCCCGTCGCTCCGTGACGCGGA
LOC_Os01g59780
OsAffx.21654.1.S1_x_at--705--1791Chr01:34904124..34904148 (25 bp)
ACCGCGCCGACTTCGAGGCCAGGTA
LOC_Os01g59780
OsAffx.21654.1.S1_x_at--281--4091Chr01:34904224..34904248 (25 bp)
CGACGATGACGTGCTGCGTAGCCTG
LOC_Os01g59780
OsAffx.21654.1.S1_x_at--17--1911Chr01:34904232..34904256 (25 bp)
ACGTGCTGCGTAGCCTGCCAGACGA
LOC_Os01g59780
OsAffx.21654.1.S1_x_at--301--1891Chr01:34904274..34904298 (25 bp)
ACGTCGAGAGCCTCTTCCTGGACGC
LOC_Os01g59780
OsAffx.21654.1.S1_x_at--658--4051Chr01:34904331..34904355 (25 bp)
CGATGCCAGACGACGTGGAACGCGC
LOC_Os01g59780
Target Sequence 
GTCCGTCTGCAAGACCGAGCCGGAGCTGGAGCCGCCGCAGCCGGCGGCGCCTCCAGGCTCGGAGTCACTTCTCCGGCCCA
AGATGGAGCCCTGCGACGACTGGGAGCCGCCGGCGATTTGCCCGTCGCTCCGTGACGCGGACGACGCGGACCACGCCATC
GCCGAGATCCTGCCGGCGCTCTGCATGGACCGCGCCGACTTCGAGGCCAGGTACCCTGCCCGCCGCGCCCGCGACGCCGC
CGCCGACGGCTGGTCGACGTCGTCGGACGACGTCGCCGCCGCCTCCGTCGACGATGACGTGCTGCGTAGCCTGCCAGACG
ACGTGGGCTTCGTCGACGACGTCGAGAGCCTCTTCCTGGACGCGCCCGGCCCGGCCGCCGCCGCCGCCGCCGCCGCGATG
CCAGACGACGTGGAACGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21654.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis