Browse Element(s) Details


OsAffx.9467.1.S1_at

Description tigr:9629.m05859
TID=OsAffx.9467.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5964011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59580OsAffx.985.1.S1_x_at11/111+34785572..34792859Protein kinase domain containing protein
LOC_Os01g59589OsAffx.21659.1.S1_at2/111+34794308..34794507NA
LOC_Os01g59600Os.3706.1.S1_at11/111+34797869..34802345Proteasome subunit alpha type 3, putative, expressed
LOC_Os01g59610NANA1+34803170..34803795serine protease inhibitor, Kazal-type family protein, putative, expressed
LOC_Os01g59620Os.35901.1.S1_at10/111+34807419..34811830YDG/SRA domain containing protein, expressed
LOC_Os01g59630Os.23590.1.A1_at10/111+34812128..34816646Exostosin family protein, expressed
LOC_Os01g59640OsAffx.9467.1.S1_at11/111+34817654..34819545No apical meristem protein, expressed
LOC_Os01g59660Os.2698.3.S1_x_at11/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59660OsAffx.30142.1.S1_x_at1/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59670OsAffx.9464.2.S1_x_at11/111+34840966..34847732expressed protein
LOC_Os01g59670Os.23591.1.A1_at10/111+34840966..34847732expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009744biological_processresponse to sucrose stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009825biological_processmultidimensional cell growth
GO:0009908biological_processflower development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9467.1.S1_at--761--591Chr01:34818426..34818450 (25 bp)
ATGCCTCACCTATCACGAATACGAT
LOC_Os01g59640
OsAffx.9467.1.S1_at--992--4051Chr01:34818405..34818429 (25 bp)
CGATGAGAGCATGCCGACGCCAAAG
LOC_Os01g59640
OsAffx.9467.1.S1_at--805--1831Chr01:34818367..34818391 (25 bp)
ACGCGATCAAGACGCCGTGGAAGAT
LOC_Os01g59640
OsAffx.9467.1.S1_at--594--7651Chr01:34818340..34818364 (25 bp)
GGGAGTTCGTGTGTTCCAACTCCAA
LOC_Os01g59640
OsAffx.9467.1.S1_at--896--611Chr01:34818064..34818311 (25 bp)
ATGCGGCTCAACGACTGGGTGTTGT
LOC_Os01g59640
OsAffx.9467.1.S1_at--206--5351Chr01:34818002..34818026 (25 bp)
GAAGTTCAAACCACAACGCAGCAAG
LOC_Os01g59640
OsAffx.9467.1.S1_at--982--8271Chr01:34817926..34817950 (25 bp)
GGCATTGTGATCAGGCAGCCGTCAG
LOC_Os01g59640
OsAffx.9467.1.S1_at--949--7731Chr01:34817804..34817828 (25 bp)
GGTGGTGGATCCTATGCCATTGCAT
LOC_Os01g59640
OsAffx.9467.1.S1_at--678--591Chr01:34817791..34817815 (25 bp)
ATGCCATTGCATATGATTCCTCCTT
LOC_Os01g59640
OsAffx.9467.1.S1_at--806--5171Chr01:34817759..34817783 (25 bp)
GAATTATTTCAGCACGGGAGTTACT
LOC_Os01g59640
OsAffx.9467.1.S1_at--765--1171Chr01:34817710..34817734 (25 bp)
AGTACGGGAGTCGATTCATATGGTT
LOC_Os01g59640
Target Sequence 
ATGCCTCACCTATCACGAATACGATGAGAGCATGCCGACGCCAAAGTTGAAGAAAGAGAACGCGATCAAGACGCCGTGGA
AGATGTGGGAGTTCGTGTGTTCCAACTCCAACCGGCCGTTCGACGCGGAGGAGGAGCCCATGCGGCTCAACGACTGGGTG
TTGTGCAAAGTTACCAACAAGGACAACAAAGTTACCACCAAGAAGTTCAAACCACAACGCAGCAAGAAGCCGAAGAAGCC
GAAGAAGCTACAGCAGGAGGAACAGCCACAAAACCAAGGCATTGTGATCAGGCAGCCGTCAGAATCCGGCTCGGCCTCCT
CGTCGCACCAAGAAATCCCTGGCTCTTCTCTTCCCGGAGCCGGAGGAGACGCCGCGGCCGCGGCGGCGACGGCGGCGGCG
GTGGTGGATCCTATGCCATTGCATATGATTCCTCCTTCTTCATGGAATTATTTCAGCACGGGAGTTACTGCAGATGGTAT
TGTTATGGATGACAGTACGGGAGTCGATTCATATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis