Browse Element(s) Details


Os.34478.1.S1_at

Description gb:AK071235.1
DB_XREF= gi:32981258
TID=Os.34478.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0597G07.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086P13, full insert sequence.
FL= gb:AK071235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4900011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48980Os.1479.1.S1_at11/117+29321412..29322933Nicotianamine synthase 3, putative, expressed
LOC_Os07g48989NANA7+29327175..29327558NA
LOC_Os07g49000Os.34478.2.S1_x_at11/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49000Os.34478.1.S1_at11/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49000OsAffx.26408.1.S1_x_at2/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49010Os.27285.1.S1_at11/117+29341295..29349143BRCA1 C Terminus domain containing protein, expressed
LOC_Os07g49010Os.23591.1.A1_at1/117+29341295..29349143BRCA1 C Terminus domain containing protein, expressed
LOC_Os07g49020NANA7+29349956..29350222expressed protein
LOC_Os07g49030Os.7312.1.S1_a_at10/117+29351351..29355429PHD-finger family protein, expressed
LOC_Os07g49040Os.14932.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55724.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55711.1.S1_at10/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.51367.1.S2_at1/117+29361990..29368763protein phosphatase 2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34478.1.S1_at--1029--6311Chr07:29339092..29339116 (25 bp)
GATGAATTGCTAGTGCGGCCAGGAC
LOC_Os07g49000
Os.34478.1.S1_at--409--4591Chr07:29339160..29339184 (25 bp)
GCGAAGCGTTGGTTTGGTTCCAAAT
LOC_Os07g49000
Os.34478.1.S1_at--673--9451Chr07:29339184..29339208 (25 bp)
TCTGGACAAGTTGTGTACAGCTCGA
LOC_Os07g49000
Os.34478.1.S1_at--1066--9851Chr07:29339199..29339223 (25 bp)
TACAGCTCGAAATGGCGCTTTCCAG
LOC_Os07g49000
Os.34478.1.S1_at--459--2311Chr07:29339230..29339254 (25 bp)
AAACGACCCACAGAAGGCAGTTGTT
LOC_Os07g49000
Os.34478.1.S1_at--497--6631Chr07:29339281..29339305 (25 bp)
GTTGTGTACTTGTAGAGTCTGTTAA
LOC_Os07g49000
Os.34478.1.S1_at--558--6872Chr07:29339306..29339330 (25 bp)
GTATTGTAGCTCTAGTTTCCTTGTG
LOC_Os07g49000
Os.34478.1.S1_at--741--10291Chr07:29339321..29339345 (25 bp)
TTTCCTTGTGAAATCTGGTCCCTTC
LOC_Os07g49000
Os.34478.1.S1_at--172--3773Chr11:7915701..7915981 (25 bp)
CTCTCTCCCTGTAGATGTCCATGCA
NONE
Os.34478.1.S1_at--130--6271Chr07:29339380..29339404 (25 bp)
GATGTCCATGCACCATGCTAGGCTA
LOC_Os07g49000
Os.34478.1.S1_at--516--10071Chr07:29339398..29339422 (25 bp)
TAGGCTACCCTCTTGGTAATGCAAA
LOC_Os07g49000
Target Sequence 
GATGAATTGCTAGTGCGGCCAGGACGGAGGAAGAAGAAGGTGGCGGGAAAACAGAGAGCAAGTTTGAAGCGAAGCGTTGG
TTTGGTTCCAAATCTGGACAAGTTGTGTACAGCTCGAAATGGCGCTTTCCAGCGGGGAAAACGACCCACAGAAGGCAGTT
GTTGAAAAATTTTGGATTTGTCTCGTTTTGTTGTGTACTTGTAGAGTCTGTTAAGTATTGTAGCTCTAGTTTCCTTGTGA
AATCTGGTCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTGTAGATGTCCATGCACCATGCTAGGCTACCCTCTT
GGTAATGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis