Browse Element(s) Details


Os.1479.1.S1_at

Description gb:AB023819.1
DB_XREF= gi:11176987
GEN=osnas3
TID=Os.1479.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.1479 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) osnas3 mRNA for nicotianamine synthase 3, complete cds.
PROD=nicotianamine synthase 3
FL= gb:AB023819.1 gb:AK070656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4898011/11Nicotianamine synthase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48960Os.35212.1.S1_x_at11/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48960Os.47596.1.S1_at10/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48970Os.7444.1.S1_x_at11/117+29302048..29306895expressed protein
LOC_Os07g48980Os.1479.1.S1_at11/117+29321412..29322933Nicotianamine synthase 3, putative, expressed
LOC_Os07g48989NANA7+29327175..29327558NA
LOC_Os07g49000Os.34478.2.S1_x_at11/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49000Os.34478.1.S1_at11/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49000OsAffx.26408.1.S1_x_at2/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49010Os.27285.1.S1_at11/117+29341295..29349143BRCA1 C Terminus domain containing protein, expressed
LOC_Os07g49010Os.23591.1.A1_at1/117+29341295..29349143BRCA1 C Terminus domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1479.1.S1_at--940--831Chr07:29322482..29322506 (25 bp)
ATGGAGGACATGTCCGCCATGGAGA
LOC_Os07g48980
Os.1479.1.S1_at--1105--3451Chr07:29322499..29322523 (25 bp)
CATGGAGAAGCTGCCCTCCTCGTAG
LOC_Os07g48980
Os.1479.1.S1_at--753--9251Chr07:29322515..29322539 (25 bp)
TCCTCGTAGGCAGGCATCGATGACT
LOC_Os07g48980
Os.1479.1.S1_at--583--6311Chr07:29322533..29322557 (25 bp)
GATGACTGCTTCCATCGCTTGCTAC
LOC_Os07g48980
Os.1479.1.S1_at--196--3391Chr07:29322563..29322587 (25 bp)
CAGCTCACCTGATAAATCACCTCAG
LOC_Os07g48980
Os.1479.1.S1_at--184--392Chr07:29322578..29322602 (25 bp)
ATCACCTCAGTTACTATCGATTAAT
LOC_Os07g48980
Os.1479.1.S1_at--1159--6611Chr07:29322691..29322715 (25 bp)
GTTGGTAATTAACTGCAGTCATGCA
LOC_Os07g48980
Os.1479.1.S1_at--828--5251Chr07:29322717..29322741 (25 bp)
GAATGCATGCCATATTGCGTCGCTA
LOC_Os07g48980
Os.1479.1.S1_at--533--10111Chr07:29322785..29322809 (25 bp)
TATGTCGCTATTGAGTGTTACTGCT
LOC_Os07g48980
Os.1479.1.S1_at--746--6771Chr07:29322801..29322825 (25 bp)
GTTACTGCTTGATTACTGTACTAGT
LOC_Os07g48980
Os.1479.1.S1_at--824--3071Chr07:29322836..29322860 (25 bp)
AATCAACCATTGTCTCTGTTGCGTA
LOC_Os07g48980
Target Sequence 
ATGGAGGACATGTCCGCCATGGAGAAGCTGCCCTCCTCGTAGGCAGGCATCGATGACTGCTTCCATCGCTTGCTACCTCA
CCAGCTCACCTGATAAATCACCTCAGTTACTATCGATTAATCATTTACCATGCATTAATTAAGAAGAAAACATATATACC
ATAATTATCTACCAGTAAAACAAATCTAATAGTAGTATTTAATAATCTCGTTGGTAATTAACTGCAGTCATGCATGAATG
CATGCCATATTGCGTCGCTATCTTTTTTTCCCATGATGAGACTGATGAGAGAGAGAGAGAATATATGTCGCTATTGAGTG
TTACTGCTTGATTACTGTACTAGTAGCTTATTACAATCAACCATTGTCTCTGTTGCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis