Browse Element(s) Details


Os.47596.1.S1_at

Description gb:AK068511.1
DB_XREF= gi:32978529
TID=Os.47596.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153J24, full insert sequence.
FL= gb:AK068511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4896010/11Lon protease homolog 2, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48910NANA7+29266595..29268155transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g48920Os.16886.1.S1_at11/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48920Os.16886.2.S1_at3/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48930OsAffx.28960.1.S1_at11/117+29276651..29277271hypothetical protein
LOC_Os07g48940OsAffx.22589.1.S1_at11/117+29278401..29280315F-box domain containing protein
LOC_Os07g48950Os.16886.2.S1_at9/117+29287535..29289922betaine-aldehyde dehydrogenase, putative
LOC_Os07g48950Os.35212.1.S1_x_at1/117+29287535..29289922betaine-aldehyde dehydrogenase, putative
LOC_Os07g48960Os.35212.1.S1_x_at11/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48960Os.47596.1.S1_at10/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48970Os.7444.1.S1_x_at11/117+29302048..29306895expressed protein
LOC_Os07g48980Os.1479.1.S1_at11/117+29321412..29322933Nicotianamine synthase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47596.1.S1_at--33--2851Chr07:29290948..29290972 (25 bp)
AATACCCAAGGGAGTTTTGCAGCTA
LOC_Os07g48960
Os.47596.1.S1_at--89--8051Chr07:29290938..29290962 (25 bp)
GGAGTTTTGCAGCTAGACTATTCTT
LOC_Os07g48960
Os.47596.1.S1_at--327--4851Chr07:29290927..29290951 (25 bp)
GCTAGACTATTCTTTGCAACATCAA
LOC_Os07g48960
Os.47596.1.S1_at--959--331Chr07:29290900..29290924 (25 bp)
ATAACTTGATTGATCACCCTTTTTT
LOC_Os07g48960
Os.47596.1.S1_at--528--8432Chr07:29290749..29290773 (25 bp)
GGCCATTCATCCATTTTGTTTTCTG
LOC_Os07g48960
Os.47596.1.S1_at--669--571Chr07:29290741..29290765 (25 bp)
ATCCATTTTGTTTTCTGGCGAGCCA
LOC_Os07g48960
Os.47596.1.S1_at--529--8451Chr07:29290726..29290750 (25 bp)
TGGCGAGCCAGAGTTTCGTTATTTC
LOC_Os07g48960
Os.47596.1.S1_at--694--10311Chr07:29290705..29290729 (25 bp)
TTTCTTTTCCGTTCTGATAGTCTTG
LOC_Os07g48960
Os.47596.1.S1_at--1037--6491Chr07:29290690..29290714 (25 bp)
GATAGTCTTGGAGGTGTTGTCGTTC
LOC_Os07g48960
Os.47596.1.S1_at--647--10271NONE
TTGTCGTTCCTTGTCGGTATGGTAT
NONE
Os.47596.1.S1_at--707--7851Chr07:29290654..29290678 (25 bp)
GGTATGTAAGTGAACTCGTTTGTAA
LOC_Os07g48960
Target Sequence 
AATACCCAAGGGAGTTTTGCAGCTAGACTATTCTTTGCAACATCAAAAATAACTTGATTGATCACCCTTTTTTTTTGTAC
GCTCCGTGTAGCAGTAAATGTTAAGTAAAAATTTTGGCAAGAATGTTGCAGCAAGATGGCTGGGGAAGTATCACAAAGAA
AAAACTATTGTAAACTAATTCTTATAATGAACGAGGTCTGGCCATTCATCCATTTTGTTTTCTGGCGAGCCAGAGTTTCG
TTATTTCTTTTCCGTTCTGATAGTCTTGGAGGTGTTGTCGTTCCTTGTCGGTATGGTATGTAAGTGAACTCGTTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis