Browse Element(s) Details


Os.16886.2.S1_at

Description gb:NM_185525.1
DB_XREF= gi:34898135
GEN=OJ1165_F02.23
TID=Os.16886.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) betaine aldehyde dehydrogenase-like (OJ1165_F02.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) betaine aldehyde dehydrogenase-like (OJ1165_F02.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g489509/11betaine-aldehyde dehydrogenase, putative
LOC_Os07g489203/11aldehyde dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48910NANA7+29266595..29268155transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g48920Os.16886.1.S1_at11/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48920Os.16886.2.S1_at3/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48930OsAffx.28960.1.S1_at11/117+29276651..29277271hypothetical protein
LOC_Os07g48940OsAffx.22589.1.S1_at11/117+29278401..29280315F-box domain containing protein
LOC_Os07g48950Os.16886.2.S1_at9/117+29287535..29289922betaine-aldehyde dehydrogenase, putative
LOC_Os07g48950Os.35212.1.S1_x_at1/117+29287535..29289922betaine-aldehyde dehydrogenase, putative
LOC_Os07g48960Os.35212.1.S1_x_at11/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48960Os.47596.1.S1_at10/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48970Os.7444.1.S1_x_at11/117+29302048..29306895expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16886.2.S1_at--1138--10651Chr07:29289642..29289818 (25 bp)
TTCCGACGTTCATGTGCCCATAGGT
LOC_Os07g48950
Os.16886.2.S1_at--421--6751Chr07:29289635..29289659 (25 bp)
GTTCATGTGCCCATAGGTCTGAAGA
LOC_Os07g48950
Os.16886.2.S1_at--421--771Chr07:29289631..29289655 (25 bp)
ATGTGCCCATAGGTCTGAAGAAGAA
LOC_Os07g48950
Os.16886.2.S1_at--102--5211Chr07:29289609..29289633 (25 bp)
GAATACTAGTTGGTACTGTCTGGTG
LOC_Os07g48950
Os.16886.2.S1_at--254--1972Chr07:29289595..29289619 (25 bp)
ACTGTCTGGTGTACTATGGCTATCT
LOC_Os07g48950
Os.16886.2.S1_at--1023--7432Chr07:29289591..29289611 (21 bp)
GTGTACTATGGCTATCTTACTATAC
LOC_Os07g48950
Os.16886.2.S1_at--414--8311NONE
GGCTATCTTACTATACCACCAAGGA
NONE
Os.16886.2.S1_at--852--9511NONE
TCTTACTATACCACCAAGGAAAGGG
NONE
Os.16886.2.S1_at--804--2851Chr07:29288332..29288356 (25 bp)
AATGACCACCTGTGAGAAGTCACCT
LOC_Os07g48950
Os.16886.2.S1_at--93--5971Chr07:29288319..29288343 (25 bp)
GAGAAGTCACCTGGCTTTTGGATGA
LOC_Os07g48950
Os.16886.2.S1_at--586--4272Chr07:29288315..29288334 (20 bp)
CCTGGCTTTTGGATGAGGGTCAAAG
LOC_Os07g48950
Target Sequence 
TTCCGACGTTCATGTGCCCATAGGTCTGAAGAAGAATACTAGTTGGTACTGTCTGGTGTACTATGGCTATCTTACTATAC
CACCAAGGAAAGGGAAAAGAGCTCAGACTGACAAGGTCCAATGCTATGAGCCCGCTACTATGAAATACTTGGGATACTTC
CCTGCATTGACGCCTGATGAGGTTAAGGAGCATGTTGCGCAAGCCAGGAAAGCACAAAAGATATGGGCAAAAAGCAGCTC
CAAGCAAAGATGCCAGTTTCTTCGAATCCTTCTAAAATATATACTTGAACATCAGGATCTGATATGCGAGATATCACCCC
GGGACACTGGAAAGACTATGGTTGATGCTTCACTAGGTGAGATAATGACCACCTGTGAGAAGTCACCTGGCTTTTGGATG
AGGGTCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16886.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis