Browse Element(s) Details


OsAffx.28960.1.S1_at

Description gb:NM_185522.1
DB_XREF= gi:34898129
TID=OsAffx.28960.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1165_F02.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4893011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48890OsAffx.16767.1.S1_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48890OsAffx.16767.2.S1_x_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48900NANA7+29259577..29260110hypothetical protein
LOC_Os07g48910NANA7+29266595..29268155transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g48920Os.16886.1.S1_at11/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48920Os.16886.2.S1_at3/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48930OsAffx.28960.1.S1_at11/117+29276651..29277271hypothetical protein
LOC_Os07g48940OsAffx.22589.1.S1_at11/117+29278401..29280315F-box domain containing protein
LOC_Os07g48950Os.16886.2.S1_at9/117+29287535..29289922betaine-aldehyde dehydrogenase, putative
LOC_Os07g48950Os.35212.1.S1_x_at1/117+29287535..29289922betaine-aldehyde dehydrogenase, putative
LOC_Os07g48960Os.35212.1.S1_x_at11/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48960Os.47596.1.S1_at10/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48970Os.7444.1.S1_x_at11/117+29302048..29306895expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28960.1.S1_at--172--4931Chr07:29276682..29276706 (25 bp)
GCTTGACGGCTGTAGCCATAGGAGA
LOC_Os07g48930
OsAffx.28960.1.S1_at--855--6011Chr07:29276703..29276727 (25 bp)
GAGAGAGGGACAGGCCTGGCGCACG
LOC_Os07g48930
OsAffx.28960.1.S1_at--692--9531Chr07:29276733..29276757 (25 bp)
TCTACCGCCACGACGAAGAAGGCAC
LOC_Os07g48930
OsAffx.28960.1.S1_at--500--3351Chr07:29276741..29276765 (25 bp)
CACGACGAAGAAGGCACACTGAAGT
LOC_Os07g48930
OsAffx.28960.1.S1_at--173--1451Chr07:29276749..29276773 (25 bp)
AGAAGGCACACTGAAGTGGCCCCAA
LOC_Os07g48930
OsAffx.28960.1.S1_at--859--2911Chr07:29276751..29276775 (25 bp)
AAGGCACACTGAAGTGGCCCCAACC
LOC_Os07g48930
OsAffx.28960.1.S1_at--177--931Chr07:29276773..29276797 (25 bp)
ACCACCAAATCCACATACACGTGGG
LOC_Os07g48930
OsAffx.28960.1.S1_at--542--2031Chr07:29276955..29276979 (25 bp)
ACTATACGTGGTCTAAGACGCCACA
LOC_Os07g48930
OsAffx.28960.1.S1_at--1036--7791Chr07:29276964..29276988 (25 bp)
GGTCTAAGACGCCACACAATGGTAT
LOC_Os07g48930
OsAffx.28960.1.S1_at--358--5811Chr07:29276971..29276995 (25 bp)
GACGCCACACAATGGTATACGCGAG
LOC_Os07g48930
OsAffx.28960.1.S1_at--439--2192Chr07:29276977..29277001 (25 bp)
ACACAATGGTATACGCGAGGGAGGA
LOC_Os07g48930
Target Sequence 
GCTTGACGGCTGTAGCCATAGGAGAGAGGGACAGGCCTGGCGCACGGCCCTTCTACCGCCACGACGAAGAAGGCACACTG
AAGTGGCCCCAACCACCAAATCCACATACACGTGGGNANNNNNNNNNNNTGNNNGNNNNNACTATACGTGGTCTAAGACG
CCACACAATGGTATACGCGAGGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis