Browse Element(s) Details


OsAffx.16767.2.S1_x_at

Description tigr:9635.m04939
TID=OsAffx.16767.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Poly(A) polymerase central domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4889011/11Poly polymerase central domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48850Os.31656.3.S1_at11/117+29226061..29231067pentatricopeptide, putative, expressed
LOC_Os07g48860OsAffx.5665.2.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_x_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48870Os.32634.1.S1_at11/117+29240396..29241891Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g48880Os.17676.1.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.3.S1_x_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.2.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48890OsAffx.16767.1.S1_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48890OsAffx.16767.2.S1_x_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48900NANA7+29259577..29260110hypothetical protein
LOC_Os07g48910NANA7+29266595..29268155transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g48920Os.16886.1.S1_at11/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48920Os.16886.2.S1_at3/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48930OsAffx.28960.1.S1_at11/117+29276651..29277271hypothetical protein
LOC_Os07g48940OsAffx.22589.1.S1_at11/117+29278401..29280315F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0004652molecular_functionpolynucleotide adenylyltransferase activity
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16767.2.S1_x_at--335--2651Chr07:29255948..29255972 (25 bp)
AACCAACTAATTGCAGGCGTCCTGA
LOC_Os07g48890
OsAffx.16767.2.S1_x_at--1042--891Chr07:29255962..29255986 (25 bp)
AGGCGTCCTGATGGGTCTTTCATGC
LOC_Os07g48890
OsAffx.16767.2.S1_x_at--78--10551Chr07:29255980..29256004 (25 bp)
TTCATGCCCATACTGTTGCCTTGTA
LOC_Os07g48890
OsAffx.16767.2.S1_x_at--1102--9211Chr07:29256006..29256030 (25 bp)
TCCACCGGAGTTTTGCACATCCAAT
LOC_Os07g48890
OsAffx.16767.2.S1_x_at--975--10371Chr07:29256676..29256700 (25 bp)
TTTTGAGTGGGTCTGGCTTTTTGCA
LOC_Os07g48890
OsAffx.16767.2.S1_x_at--1006--10391Chr07:29256694..29256718 (25 bp)
TTTTGCACCGTTTCCATATGCTACA
LOC_Os07g48890
OsAffx.16767.2.S1_x_at--53--3171Chr07:29256729..29256753 (25 bp)
AATTCCTTCGAATTGCTCTATGTGC
LOC_Os07g48890
OsAffx.16767.2.S1_x_at--131--9551Chr07:29256745..29256769 (25 bp)
TCTATGTGCCCCAACGTCTGAAGAG
LOC_Os07g48890
OsAffx.16767.2.S1_x_at--12--3651Chr07:29256802..29256951 (25 bp)
CTTCAACCTTATCCTCAAGCTGGAA
LOC_Os07g48890
OsAffx.16767.2.S1_x_at--439--7411Chr07:29256959..29256983 (25 bp)
GTGTTGAGTGTGACCCAGATTCCAC
LOC_Os07g48890
OsAffx.16767.2.S1_x_at--241--1251Chr07:29256990..29257014 (25 bp)
AGTTGATCATACAGTCTTCGAGCCA
LOC_Os07g48890
Target Sequence 
AACCAACTAATTGCAGGCGTCCTGATGGGTCTTTCATGCCCATACTGTTGCCTTGTACTCCACCGGAGTTTTGCACATCC
AATATGACAAAAGGCACCTTCAAGAAAATTAGAGAAGAGCTTATGCGTGGTTATGCTTTGACCAAGGAGCCATGGAGGCA
TGATTTTGAGTGGGTCTGGCTTTTTGCACCGTTTCCATATGCTACAAAATACGAAGAATTCCTTCGAATTGCTCTATGTG
CCCCAACGTCTGAAGAGCTACGCGATTGGGCTGGTTGGGTGAAGTCCCGCTTCAACCTTATCCTCAAGCTGGAAAGTATT
GGTGTTGAGTGTGACCCAGATTCCACAGAGGAAGTTGATCATACAGTCTTCGAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16767.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis