Browse Element(s) Details


OsAffx.5665.1.S1_x_at

Description gb:NM_185511.1
DB_XREF= gi:34898107
TID=OsAffx.5665.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1165_F02.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4886011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48810Os.13937.1.S1_at11/117+29207863..29211082peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os07g48820Os.10220.1.S1_at11/117+29211788..29215712Transcription factor HBP-1b, putative, expressed
LOC_Os07g48830Os.2677.1.S1_at11/117+29218623..29220150galactinol synthase 3, putative, expressed
LOC_Os07g48840Os.31656.2.S1_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48840Os.31656.1.S1_x_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48850Os.31656.3.S1_at11/117+29226061..29231067pentatricopeptide, putative, expressed
LOC_Os07g48860OsAffx.5665.2.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_x_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48870Os.32634.1.S1_at11/117+29240396..29241891Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g48880Os.17676.1.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.3.S1_x_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.2.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48890OsAffx.16767.1.S1_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48890OsAffx.16767.2.S1_x_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48900NANA7+29259577..29260110hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5665.1.S1_x_at--810--9511Chr07:29237099..29237123 (25 bp)
TCTAAATCCGCGTACGTGCTAAGCC
LOC_Os07g48860
OsAffx.5665.1.S1_x_at--1156--7311Chr07:29237084..29237108 (25 bp)
GTGCTAAGCCACGATCTGCAAGATC
LOC_Os07g48860
OsAffx.5665.1.S1_x_at--535--6411Chr07:29237072..29237096 (25 bp)
GATCTGCAAGATCACGTCGGCGATG
LOC_Os07g48860
OsAffx.5665.1.S1_x_at--691--4011Chr07:29236857..29237082 (25 bp)
CGTCGGCGATGAGCAGTGTTTGATC
LOC_Os07g48860
OsAffx.5665.1.S1_x_at--810--6851Chr07:29236840..29236864 (25 bp)
GTTTGATCGTTGGAGCACTTGCAAT
LOC_Os07g48860
OsAffx.5665.1.S1_x_at--354--2071Chr07:29236824..29236848 (25 bp)
ACTTGCAATACTAGCTTGTGGGTCA
LOC_Os07g48860
OsAffx.5665.1.S1_x_at--326--7491Chr07:29236807..29236831 (25 bp)
GTGGGTCAGTGTTTGTAGGCTCCAA
LOC_Os07g48860
OsAffx.5665.1.S1_x_at--1046--8311Chr07:29236790..29236814 (25 bp)
GGCTCCAAAGGGTTCAACTCAGTTT
LOC_Os07g48860
OsAffx.5665.1.S1_x_at--955--8151Chr07:29236360..29236384 (25 bp)
GGAACTTGTCCCGAGTTTCAGGACA
LOC_Os07g48860
OsAffx.5665.1.S1_x_at--635--9311Chr07:29236352..29236376 (25 bp)
TCCCGAGTTTCAGGACAAGCCTAAG
LOC_Os07g48860
OsAffx.5665.1.S1_x_at--75--2211Chr07:29236338..29236362 (25 bp)
ACAAGCCTAAGAATATGTCCCTTAA
LOC_Os07g48860
Target Sequence 
TCTAAATCCGCGTACGTGCTAAGCCACGATCTGCAAGATCACGTCGGCGATGAGCAGTGTTTGATCGTTGGAGCACTTGC
AATACTAGCTTGTGGGTCAGTGTTTGTAGGCTCCAAAGGGTTCAACTCAGTTTCATTCAAGAAAAGAAGAACAAAAAAGA
ATGAAAAAGATGGCTGCGAGACAGGGCTAGAGGGGACAGCGTCTGATACACGAGGGGAGCTTAACAAAAACTTGTTGATG
AAAGGAACTTGTCCCGAGTTTCAGGACAAGCCTAAGAATATGTCCCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5665.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis