Browse Element(s) Details


Os.31656.1.S1_x_at

Description gb:AK069836.1
DB_XREF= gi:32979860
TID=Os.31656.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) membrane-associated salt-inducible protein-like (OJ1165_F02.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031I12, full insert sequence.
FL= gb:AK069836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4884011/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48780Os.51736.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.182.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.57504.1.S1_x_at6/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48790Os.53516.1.S1_at11/117+29200303..292028635'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed
LOC_Os07g48800OsAffx.28959.1.S1_s_at11/117+29205241..29205849VQ motif family protein, expressed
LOC_Os07g48810Os.13937.1.S1_at11/117+29207863..29211082peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os07g48820Os.10220.1.S1_at11/117+29211788..29215712Transcription factor HBP-1b, putative, expressed
LOC_Os07g48830Os.2677.1.S1_at11/117+29218623..29220150galactinol synthase 3, putative, expressed
LOC_Os07g48840Os.31656.2.S1_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48840Os.31656.1.S1_x_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48850Os.31656.3.S1_at11/117+29226061..29231067pentatricopeptide, putative, expressed
LOC_Os07g48860OsAffx.5665.2.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_x_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48870Os.32634.1.S1_at11/117+29240396..29241891Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g48880Os.17676.1.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.3.S1_x_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.2.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31656.1.S1_x_at--894--9551Chr07:29225390..29225414 (25 bp)
TCTTTTGCAGCTCTCATGTGGAACT
LOC_Os07g48840
Os.31656.1.S1_x_at--645--10491Chr07:29225454..29225478 (25 bp)
TTAAGGCATGCTTTGCCGGGCACGA
LOC_Os07g48840
Os.31656.1.S1_x_at--1086--2871Chr07:29225483..29225507 (25 bp)
AAGGGAGGTCACTCTGTGGACTCGC
LOC_Os07g48840
Os.31656.1.S1_x_at--211--8671Chr07:29225497..29225521 (25 bp)
TGTGGACTCGCATGGCGTACATCAC
LOC_Os07g48840
Os.31656.1.S1_x_at--1022--1771Chr07:29225520..29225544 (25 bp)
ACCGGACTCTTGAGGCTGCATTGGA
LOC_Os07g48840
Os.31656.1.S1_x_at--679--6111Chr07:29225543..29225567 (25 bp)
GAGTGTCCTCCTGGTACTAGTGCAT
LOC_Os07g48840
Os.31656.1.S1_x_at--238--7611Chr07:29225570..29225594 (25 bp)
GGGCACATCGAAGTGTATCCAGACA
LOC_Os07g48840
Os.31656.1.S1_x_at--1022--1231Chr07:29225595..29225619 (25 bp)
AGTTGTTGCTTGTGGGTTCTGATAA
LOC_Os07g48840
Os.31656.1.S1_x_at--476--1971Chr07:29225630..29225654 (25 bp)
ACTGAGATGTGTTTTGAGCCCTAGA
LOC_Os07g48840
Os.31656.1.S1_x_at--906--6111Chr07:29225670..29225694 (25 bp)
GAGGGAAATTCATCCAACTTCATTG
LOC_Os07g48840
Os.31656.1.S1_x_at--206--1611Chr07:29225791..29225815 (25 bp)
AGCTGCTATGCTTGCCGCTTAATCT
LOC_Os07g48840
Target Sequence 
TCTTTTGCAGCTCTCATGTGGAACTACGATGAGGTGATGGCTATTGTTCGCCAGTACAAATGTGTTAAGGCATGCTTTGC
CGGGCACGACCACAAGGGAGGTCACTCTGTGGACTCGCATGGCGTACATCACCGGACTCTTGAGGCTGCATTGGAGTGTC
CTCCTGGTACTAGTGCATTCGGGCACATCGAAGTGTATCCAGACAAGTTGTTGCTTGTGGGTTCTGATAAAATGGCTGAT
ACTGAGATGTGTTTTGAGCCCTAGAGTGAACTGTGTAGCGGAGGGAAATTCATCCAACTTCATTGTTTTGATTAATATTC
AGAAACATGTGACTTCATTATACTCATTTTCTGGNAGCATAATTACATGTATGTAATAGCATGGAAACTGGAGGTGNCAN
CAGCTGCTATGCTTGCCGCTTAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31656.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis