Browse Element(s) Details


Os.53516.1.S1_at

Description gb:AK073043.1
DB_XREF= gi:32983066
TID=Os.53516.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150G03, full insert sequence.
FL= gb:AK073043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4879011/115'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48720Os.52517.1.S1_at11/117+29172299..29176633RINT-1/TIP-1 family protein, expressed
LOC_Os07g48730Os.49354.1.S1_at11/117+29177968..29179798serine/threonine-protein kinase NAK, putative, expressed
LOC_Os07g48750Os.9163.1.S1_at2/117+29182003..29186422Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os07g48760OsAffx.16766.1.S1_at11/117+29188672..29192485CIPK-like protein 1, putative, expressed
LOC_Os07g48770Os.5187.1.S1_at11/117+29193380..29195770expressed protein
LOC_Os07g48780Os.51736.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.182.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.57504.1.S1_x_at6/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48790Os.53516.1.S1_at11/117+29200303..292028635'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed
LOC_Os07g48800OsAffx.28959.1.S1_s_at11/117+29205241..29205849VQ motif family protein, expressed
LOC_Os07g48810Os.13937.1.S1_at11/117+29207863..29211082peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os07g48820Os.10220.1.S1_at11/117+29211788..29215712Transcription factor HBP-1b, putative, expressed
LOC_Os07g48830Os.2677.1.S1_at11/117+29218623..29220150galactinol synthase 3, putative, expressed
LOC_Os07g48840Os.31656.2.S1_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48840Os.31656.1.S1_x_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48850Os.31656.3.S1_at11/117+29226061..29231067pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0004679molecular_functionAMP-activated protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53516.1.S1_at--802--4191Chr07:29200870..29200894 (25 bp)
CCCGGATAGCGTGGACAGTGTGTCA
LOC_Os07g48790
Os.53516.1.S1_at--627--7451Chr07:29200851..29200875 (25 bp)
GTGTCAGAGCTGATGGCTCCTCCAT
LOC_Os07g48790
Os.53516.1.S1_at--816--8431Chr07:29200668..29200692 (25 bp)
GGCCATGTCTTCATCGGCAAGGGCA
LOC_Os07g48790
Os.53516.1.S1_at--48--10531Chr07:29200611..29200635 (25 bp)
TTCAGGTTCCAGTCCAAGTTTGTCA
LOC_Os07g48790
Os.53516.1.S1_at--243--6871Chr07:29200594..29200618 (25 bp)
GTTTGTCACCAAAGTCCTCTACAAG
LOC_Os07g48790
Os.53516.1.S1_at--1015--1151Chr07:29200515..29200539 (25 bp)
AGTCATGCATTCTGTTCATTCATTG
LOC_Os07g48790
Os.53516.1.S1_at--154--7571Chr07:29200458..29200482 (25 bp)
GGGCGTGGACCGTGATGATTTCATC
LOC_Os07g48790
Os.53516.1.S1_at--566--2491Chr07:29200418..29200442 (25 bp)
AACAGACCCATTGATGTGCTTTTCA
LOC_Os07g48790
Os.53516.1.S1_at--375--6251Chr07:29200406..29200430 (25 bp)
GATGTGCTTTTCAGTCACCAATTTG
LOC_Os07g48790
Os.53516.1.S1_at--791--211Chr07:29200386..29200410 (25 bp)
ATTTGTTTGCTGACGCCATATTAAG
LOC_Os07g48790
Os.53516.1.S1_at--16--7771Chr07:29200339..29200363 (25 bp)
GGTGATCGATACTCTTTCATACATT
LOC_Os07g48790
Target Sequence 
CCCGGATAGCGTGGACAGTGTGTCAGAGCTGATGGCTCCTCCATCGCCGGACTCCAGCTACGGTTTCCTGGCTCCTGACG
ACAAGGAGTTCACCAAGGAGCCTCCCGCTCTGCCGCCGCAGCTCCACCTGGGCGTGCTCAACTCGCGAGGAGGCTCCGGC
GGGAAGGAGGGAGAGTGCGCCATGCCCAAGCACAACGTCCTCGGCCATGTCTTCATCGGCAAGGGCACCCCACCCATGGT
CGCTGCCCTCGGCACCACCTTCAGGTTCCAGTCCAAGTTTGTCACCAAAGTCCTCTACAAGGCCATCCAAAGAGAGGACA
GATAGCTTTATTAGCTGGCAATGCTAGAACAAATTAGTCATGCATTCTGTTCATTCATTGTTTTGGAATAGTAATAATAA
TGGTAATCTTGAGGGCGTGGACCGTGATGATTTCATCAGTGTTAGGAACAAAAACAGACCCATTGATGTGCTTTTCAGTC
ACCAATTTGTTTGCTGACGCCATATTAAGGATCTACCAGAAGAATAAAGATGGTGATCGATACTCTTTCATACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis