Browse Element(s) Details


Os.57504.1.S1_x_at

Description gb:AJ271913.1
DB_XREF= gi:7161882
TID=Os.57504.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57504 (NCBI UniGene Cluster)
UG_TITLE=Partial mRNA for putative calmodulin (caM gene)
DEF=Oryza sativa partial mRNA for putative calmodulin (caM gene).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g487806/11Calmodulin, putative, expressed
LOC_Os05g412101/11Calmodulin, putative, expressed
LOC_Os01g162401/11Calmodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48720Os.52517.1.S1_at11/117+29172299..29176633RINT-1/TIP-1 family protein, expressed
LOC_Os07g48730Os.49354.1.S1_at11/117+29177968..29179798serine/threonine-protein kinase NAK, putative, expressed
LOC_Os07g48750Os.9163.1.S1_at2/117+29182003..29186422Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os07g48760OsAffx.16766.1.S1_at11/117+29188672..29192485CIPK-like protein 1, putative, expressed
LOC_Os07g48770Os.5187.1.S1_at11/117+29193380..29195770expressed protein
LOC_Os07g48780Os.51736.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.182.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.57504.1.S1_x_at6/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48790Os.53516.1.S1_at11/117+29200303..292028635'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed
LOC_Os07g48800OsAffx.28959.1.S1_s_at11/117+29205241..29205849VQ motif family protein, expressed
LOC_Os07g48810Os.13937.1.S1_at11/117+29207863..29211082peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os07g48820Os.10220.1.S1_at11/117+29211788..29215712Transcription factor HBP-1b, putative, expressed
LOC_Os07g48830Os.2677.1.S1_at11/117+29218623..29220150galactinol synthase 3, putative, expressed
LOC_Os07g48840Os.31656.2.S1_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48840Os.31656.1.S1_x_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009612biological_processresponse to mechanical stimulus
GO:0009652biological_processthigmotropism
GO:0019722biological_processcalcium-mediated signaling
GO:0030163biological_processprotein catabolism
GO:0004871molecular_functionsignal transducer activity
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57504.1.S1_x_at--561--3211NONE
CAAGGACGGCGACGGTTGCATCACA
NONE
Os.57504.1.S1_x_at--1111--6651Chr07:29196705..29196729 (25 bp)
GTTGCATCACAACCAAGGAGTTGGG
LOC_Os07g48780
Os.57504.1.S1_x_at--932--6051Chr07:29196688..29196712 (25 bp)
GAGTTGGGAACTGTCATGCGTTCAC
LOC_Os07g48780
Os.57504.1.S1_x_at--1026--3871Chr07:29196678..29196702 (25 bp)
CTGTCATGCGTTCACTAGGGCAGAA
LOC_Os07g48780
Os.57504.1.S1_x_at--39--4871NONE
GTTCACTAGGGCAGAACCCAACTGA
NONE
Os.57504.1.S1_x_at--647--6651Chr07:29196616..29196640 (25 bp)
GTTGATGCTGATGGCAATGGAACCA
LOC_Os07g48780
Os.57504.1.S1_x_at--224--3211Chr07:29196602..29196626 (25 bp)
CAATGGAACCATTGATTTTCCTGAG
LOC_Os07g48780
Os.57504.1.S1_x_at--1032--9251Chr01:9192814..9192837 (24 bp)
TCCTGAGTTTCTCAACCTGATGGCT
LOC_Os01g16240
Os.57504.1.S1_x_at--353--8331Chr07:29196563..29196587 (25 bp)
GGCTCGCAAGATGAAGGACACTGAT
LOC_Os07g48780
Os.57504.1.S1_x_at--277--2431NONE
AAAACGGCTTCATCTCCGCTGCTGA
NONE
Os.57504.1.S1_x_at--941--8911Chr05:24049750..24049774 (25 bp)
TGACCAACCTTGGTGAGAAGCTGAC
LOC_Os05g41210
Target Sequence 
CAAGGACGGCGACGGTTGCATCACAACCAAGGAGTTGGGAACTGTCATGCGTTCACTAGGGCAGAACCCAACTGAGGCTG
AGCTCCAGGACATGATCAACGAGGTTGATGCTGATGGCAATGGAACCATTGATTTTCCTGAGTTTCTCAACCTGATGGCT
CGCAAGATGAAGGACACTGATTCTGAGGAAGAGCTCAAGGAGGCCTTCCGTGTGTTTGACAAGGACCAAAACGGCTTCAT
CTCCGCTGCTGAGCTCCGTCATGTCATGACCAACCTTGGTGAGAAGCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57504.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis