Browse Element(s) Details


Os.52517.1.S1_at

Description gb:AK067620.1
DB_XREF= gi:32977638
TID=Os.52517.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013109M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109M11, full insert sequence.
FL= gb:AK067620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4872011/11RINT-1/TIP-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48670NANA7+29148147..29149634retrotransposon protein, putative, unclassified
LOC_Os07g48680Os.51359.1.S1_at10/117+29150852..29151741Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g48700OsAffx.28957.1.S1_at11/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.4557.1.S1_s_at1/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.2045.1.S1_x_at1/117+29154288..29160937expressed protein
LOC_Os07g48690Os.49951.1.S1_at11/117+29160723..29164881expressed protein
LOC_Os07g48710Os.4651.1.S1_at11/117+29169385..29170532VQ motif family protein, expressed
LOC_Os07g48720Os.52517.1.S1_at11/117+29172299..29176633RINT-1/TIP-1 family protein, expressed
LOC_Os07g48730Os.49354.1.S1_at11/117+29177968..29179798serine/threonine-protein kinase NAK, putative, expressed
LOC_Os07g48750Os.9163.1.S1_at2/117+29182003..29186422Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os07g48760OsAffx.16766.1.S1_at11/117+29188672..29192485CIPK-like protein 1, putative, expressed
LOC_Os07g48770Os.5187.1.S1_at11/117+29193380..29195770expressed protein
LOC_Os07g48780Os.51736.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.182.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.57504.1.S1_x_at6/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48790Os.53516.1.S1_at11/117+29200303..292028635'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52517.1.S1_at--680--7571Chr07:29176075..29176099 (25 bp)
GGGCTGCTCTATGTCACTATGATGA
LOC_Os07g48720
Os.52517.1.S1_at--917--1071Chr07:29176163..29176187 (25 bp)
AGTGGTTACCGGCTGCAATTCCAGG
LOC_Os07g48720
Os.52517.1.S1_at--504--5991Chr07:29176255..29176279 (25 bp)
GAGACTTATCTGGTGTTCGCAGCAG
LOC_Os07g48720
Os.52517.1.S1_at--530--751Chr07:29176304..29176328 (25 bp)
ATGTACTACATTCTCTCCAGGGTGA
LOC_Os07g48720
Os.52517.1.S1_at--1003--5991Chr07:29176330..29176354 (25 bp)
GAGACCTGCGAGTCTTGGACGACAA
LOC_Os07g48720
Os.52517.1.S1_at--653--8051Chr07:29176358..29176382 (25 bp)
GGAGATGGCCGCTTTGCAACGCAAA
LOC_Os07g48720
Os.52517.1.S1_at--465--10131Chr07:29176416..29176440 (25 bp)
TTTGACCGGCTCGATCGTAATCAAC
LOC_Os07g48720
Os.52517.1.S1_at--952--3111Chr07:29176486..29176510 (25 bp)
AATATTCAAGATCTCGTCTGCCTCA
LOC_Os07g48720
Os.52517.1.S1_at--843--231Chr07:29176524..29176548 (25 bp)
ATATAGTCAATGTTCACCGTCTCGC
LOC_Os07g48720
Os.52517.1.S1_at--441--751Chr07:29176574..29176598 (25 bp)
ATGTATGCCGTGTTAATCCTGATCC
LOC_Os07g48720
Os.52517.1.S1_at--221--6591Chr07:29176585..29176609 (25 bp)
GTTAATCCTGATCCGTACCTTGAAA
LOC_Os07g48720
Target Sequence 
GGGCTGCTCTATGTCACTATGATGACGGCAATCTTCNGCCTGTCCTCCTTCCAGGAAACATCTCTTCTGAGAAGTTTAAC
ACGTGGTTAGTGGTTACCGGCTGCAATTCCAGGCCCACTCCAAGGATAATGCGCCTGTTGGAACGCAGGATAGCAAAACA
GTTTGCGTTTCAAGATTGAAGAGACTTATCTGGTGTTCGCAGCAGCTTCGCGTTGAAACTAGTTTTGGCATGTACTACAT
TCTCTCCAGGGTGATGAGACCTGCGAGTCTTGGACGACAAATTGGAGATGGCCGCTTTGCAACGCAAAAGTCCGCCGCCG
CCGCCCCCTGTTTATCGCTTCTTTGACCGGCTCGATCGTAATCAACCCAAACACATCATGTTGCATGCAAAGCTAGCAGA
TGTAACAACAAAATATTCAAGATCTCGTCTGCCTCAAATTCTCTGAGTAATATAGTCAATGTTCACCGTCTCGCAGACTA
TGATTATGTCGCATATCTCATGTATGCCGTGTTAATCCTGATCCGTACCTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis