Browse Element(s) Details


Os.51359.1.S1_at

Description gb:AK062636.1
DB_XREF= gi:32972654
TID=Os.51359.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D02, full insert sequence.
FL= gb:AK062636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4868010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48650Os.49915.1.A1_at11/117+29128580..29131180Subtilisin N-terminal Region family protein, expressed
LOC_Os07g48660Os.57096.1.S1_at11/117+29143215..29145344bZIP transcription factor family protein, expressed
LOC_Os07g48670NANA7+29148147..29149634retrotransposon protein, putative, unclassified
LOC_Os07g48680Os.51359.1.S1_at10/117+29150852..29151741Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g48700OsAffx.28957.1.S1_at11/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.4557.1.S1_s_at1/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.2045.1.S1_x_at1/117+29154288..29160937expressed protein
LOC_Os07g48690Os.49951.1.S1_at11/117+29160723..29164881expressed protein
LOC_Os07g48710Os.4651.1.S1_at11/117+29169385..29170532VQ motif family protein, expressed
LOC_Os07g48720Os.52517.1.S1_at11/117+29172299..29176633RINT-1/TIP-1 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51359.1.S1_at--935--7771Chr07:29151328..29151352 (25 bp)
GGTGCCGGCACCTGTTCCACCGTGG
LOC_Os07g48680
Os.51359.1.S1_at--1066--6571Chr07:29151185..29151209 (25 bp)
GATTCGGACTCGGACATGGTGATGT
LOC_Os07g48680
Os.51359.1.S1_at--847--731Chr07:29151164..29151188 (25 bp)
ATGTTCATGGCGTACCTGCGAAGCA
LOC_Os07g48680
Os.51359.1.S1_at--761--9131Chr07:29151148..29151172 (25 bp)
TGCGAAGCAGTAGCACCTGGCTCTA
LOC_Os07g48680
Os.51359.1.S1_at--524--6951Chr07:29151139..29151163 (25 bp)
GTAGCACCTGGCTCTAGCCATTAAG
LOC_Os07g48680
Os.51359.1.S1_at--1120--9491Chr07:29151127..29151151 (25 bp)
TCTAGCCATTAAGGGCGTGTTTAGT
LOC_Os07g48680
Os.51359.1.S1_at--1004--8433Chr10:19677568..19677591 (24 bp)
GGCCATGATTAACTATAAGTGCTAC
NONE
Os.51359.1.S1_at--387--1131Chr07:29150954..29150978 (25 bp)
AGTGCTACAATAACTTACATGTGCT
LOC_Os07g48680
Os.51359.1.S1_at--122--10231Chr07:29150878..29150902 (25 bp)
TATTCGTGACCGAAAATCCCTTTTG
LOC_Os07g48680
Os.51359.1.S1_at--654--534Chr06:26090751..26090770 (20 bp)
ATCCCTTTTGACATCCGGTCAAACG
NONE
Os.51359.1.S1_at--1005--3531Chr07:29150852..29150876 (25 bp)
CATCCGGTCAAACGTACAACGTGAC
NONE
Target Sequence 
GGTGCCGGCACCTGTTCCACCGTGGCTGCCTCGACCGGTGGTGGTTGTCGGCGCGGCCGCCCGCCACGTGCCCGCTCTGC
CGCTGCCGGCTCCTGCAGAGCCCGTCGGCGGCGGCGGACGACGGCGACGGCGACGGCGAGGAGGATTCGGACTCGGACAT
GGTGATGTTCATGGCGTACCTGCGAAGCAGTAGCACCTGGCTCTAGCCATTAAGGGCGTGTTTAGTTCCAAAAACTTTTC
TCAAAAACATCGCATCAAATCTTTAGACACATATATAGGACATTAAATATAGATAAATAAAAAACTAATGGCATAGTTTG
CATATAAATCGCGAGACGAATCTTTTGAGTCTAATTAGGCCATGATTAACTATAAGTGCTACAATAACTTACATGTGCTA
ATGACAGATTGATTAGGCTTAAAAGATTCGTCTCGTGGTTTTAGTTTTTTTATTCGTGACCGAAAATCCCTTTTGACATC
CGGTCAAACGTACAACGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis