Browse Element(s) Details


Os.49915.1.A1_at

Description gb:AK119348.1
DB_XREF= gi:37988971
TID=Os.49915.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-E09, full insert sequence.
FL= gb:AK119348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4865011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48610Os.53114.1.S1_at11/117+29108210..29110097hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g48620Os.50467.1.S1_at11/117+29110603..29113698expressed protein
LOC_Os07g48630Os.10423.1.S1_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.10423.1.S1_s_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.12691.3.S1_x_at1/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48640Os.36076.1.S1_at11/117+29120197..29123265oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g48650Os.49915.1.A1_at11/117+29128580..29131180Subtilisin N-terminal Region family protein, expressed
LOC_Os07g48660Os.57096.1.S1_at11/117+29143215..29145344bZIP transcription factor family protein, expressed
LOC_Os07g48670NANA7+29148147..29149634retrotransposon protein, putative, unclassified
LOC_Os07g48680Os.51359.1.S1_at10/117+29150852..29151741Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g48700OsAffx.28957.1.S1_at11/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.4557.1.S1_s_at1/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.2045.1.S1_x_at1/117+29154288..29160937expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49915.1.A1_at--54--9291Chr07:29130857..29130881 (25 bp)
TCCGGAGTCCGGTGGTGCTCTACAT
LOC_Os07g48650
Os.49915.1.A1_at--5--5551Chr07:29130940..29130964 (25 bp)
GACAACTGGGCCTGAAGTTCTTCAT
LOC_Os07g48650
Os.49915.1.A1_at--217--5351Chr07:29130953..29130977 (25 bp)
GAAGTTCTTCATGGGCTATGTACAT
LOC_Os07g48650
Os.49915.1.A1_at--236--7811Chr07:29130979..29131003 (25 bp)
GGTCGTACGCTTTGCTGTGTGAATA
LOC_Os07g48650
Os.49915.1.A1_at--240--7351Chr07:29130997..29131021 (25 bp)
GTGAATACTAATAACTGGGCCGATT
LOC_Os07g48650
Os.49915.1.A1_at--420--8631Chr07:29131012..29131036 (25 bp)
TGGGCCGATTTTTTACTATAATCCT
LOC_Os07g48650
Os.49915.1.A1_at--1137--9751Chr07:29131036..29131060 (25 bp)
TAATGGGCTTTTGGGTTACTCTCGC
LOC_Os07g48650
Os.49915.1.A1_at--1092--7671Chr07:29131048..29131072 (25 bp)
GGGTTACTCTCGCACGCAGTTTCAG
LOC_Os07g48650
Os.49915.1.A1_at--276--1211Chr07:29131065..29131089 (25 bp)
AGTTTCAGCCCATCAGACTGTACTG
LOC_Os07g48650
Os.49915.1.A1_at--917--7911Chr07:29131094..29131118 (25 bp)
GGATTGAGATACTCTACCTGCCACT
LOC_Os07g48650
Os.49915.1.A1_at--82--1751Chr07:29131109..29131133 (25 bp)
ACCTGCCACTTTGCCTTGTTAATAA
LOC_Os07g48650
Target Sequence 
TCCGGAGTCCGGTGGTGCTCTACATCCCCGTCGCTTCCGCACCGCCGTCGCCGCCGATGCCGGCGGTTGGGACTCGGCGC
GGAGACAACTGGGCCTGAAGTTCTTCATGGGCTATGTACATGGGTCGTACGCTTTGCTGTGTGAATACTAATAACTGGGC
CGATTTTTTACTATAATCCTAATGGGCTTTTGGGTTACTCTCGCACGCAGTTTCAGCCCATCAGACTGTACTGGAANGGA
TTGAGATACTCTACCTGCCACTTTGCCTTGTTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49915.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis