Browse Element(s) Details


Os.10423.1.S1_s_at

Description gb:AB074972.1
DB_XREF= gi:17221606
GEN=OsEIL2
TID=Os.10423.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10423 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsEIL2 mRNA for ethylene-insensitive-3-like protein, complete cds.
PROD=ethylene-insensitive-3-like protein
FL= gb:AB074972.1 gb:AK060806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4863011/11ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48596Os.52524.1.S1_at10/117+29090310..29092447transfactor, putative, expressed
LOC_Os07g48602Os.10916.1.S1_at11/117+29094835..29098167expressed protein
LOC_Os07g48610Os.53114.1.S1_at11/117+29108210..29110097hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g48620Os.50467.1.S1_at11/117+29110603..29113698expressed protein
LOC_Os07g48630Os.10423.1.S1_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.10423.1.S1_s_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.12691.3.S1_x_at1/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48640Os.36076.1.S1_at11/117+29120197..29123265oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g48650Os.49915.1.A1_at11/117+29128580..29131180Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10423.1.S1_s_at--1017--9651Chr07:29114707..29114731 (25 bp)
TCAGCAGCAGCAGGCTAATTTCTTC
LOC_Os07g48630
Os.10423.1.S1_s_at--707--1511Chr07:29114702..29114726 (25 bp)
AGCAGCAGGCTAATTTCTTCATCCG
LOC_Os07g48630
Os.10423.1.S1_s_at--894--1511Chr07:29114699..29114723 (25 bp)
AGCAGGCTAATTTCTTCATCCGCGA
LOC_Os07g48630
Os.10423.1.S1_s_at--501--4991Chr07:29114698..29114722 (25 bp)
GCAGGCTAATTTCTTCATCCGCGAC
LOC_Os07g48630
Os.10423.1.S1_s_at--601--1911Chr07:29114528..29114552 (25 bp)
ACTGGTTCTACTGAAACGAATTCGA
LOC_Os07g48630
Os.10423.1.S1_s_at--481--7831Chr07:29114525..29114549 (25 bp)
GGTTCTACTGAAACGAATTCGAATC
LOC_Os07g48630
Os.10423.1.S1_s_at--263--9911Chr07:29114520..29114544 (25 bp)
TACTGAAACGAATTCGAATCGAATG
LOC_Os07g48630
Os.10423.1.S1_s_at--774--2331Chr07:29114488..29114512 (25 bp)
AAAGAATCACCACCCCTAGTTCGAT
LOC_Os07g48630
Os.10423.1.S1_s_at--612--371Chr07:29114483..29114507 (25 bp)
ATCACCACCCCTAGTTCGATTCGAT
LOC_Os07g48630
Os.10423.1.S1_s_at--892--3351Chr07:29114478..29114502 (25 bp)
CACCCCTAGTTCGATTCGATCAGTA
LOC_Os07g48630
Os.10423.1.S1_s_at--774--4291Chr07:29114474..29114498 (25 bp)
CCTAGTTCGATTCGATCAGTAGCTT
LOC_Os07g48630
Target Sequence 
TCAGCAGCAGCAGGCTAATTTCTTCATCCGCGACGACGCGCCGTTCGGAGGCGACGTCGCCGCCACGGCGGCGGCGGCGN
CGGAGTTCAGGTTCAGTTCAAATTTCAACGTGNCAGGAGGGGGCGCCNGTGGACTACGGCGGCGCCATGCAGCAACCGCC
GGCGAAGTACGCCGGATCCAACTGGTTCTACTGAAACGAATTCGAATCGAATGGGAACCAAAAGAATCACCACCCCTAGT
TCGATTCGATCAGTAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10423.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis