Browse Element(s) Details


Os.52524.1.S1_at

Description gb:AK067645.1
DB_XREF= gi:32977663
TID=Os.52524.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112H14, full insert sequence.
FL= gb:AK067645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4859610/11transfactor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48560Os.51714.1.S1_at11/117+29071350..29073961Homeobox domain containing protein, expressed
LOC_Os07g48570Os.10235.1.S1_at11/117+29075516..29079483Dof domain, zinc finger family protein, expressed
LOC_Os07g48570Os.16906.1.S1_at1/117+29075516..29079483Dof domain, zinc finger family protein, expressed
LOC_Os07g48580NANA7+29083200..29084333retrotransposon protein, putative, LINE subclass
LOC_Os07g48590OsAffx.21308.1.S1_at2/117+29088212..29088983hypothetical protein
LOC_Os07g48590Os.41653.1.S1_x_at2/117+29088212..29088983hypothetical protein
LOC_Os07g48596Os.52524.1.S1_at10/117+29090310..29092447transfactor, putative, expressed
LOC_Os07g48602Os.10916.1.S1_at11/117+29094835..29098167expressed protein
LOC_Os07g48610Os.53114.1.S1_at11/117+29108210..29110097hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g48620Os.50467.1.S1_at11/117+29110603..29113698expressed protein
LOC_Os07g48630Os.10423.1.S1_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.10423.1.S1_s_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.12691.3.S1_x_at1/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52524.1.S1_at--113--831NONE
ATGGATCGGTGGACAGCTGCCCGAC
NONE
Os.52524.1.S1_at--287--5931Chr07:29090804..29090828 (25 bp)
GAGCAGGACATCCTGTCCATCGGCT
LOC_Os07g48596
Os.52524.1.S1_at--443--1271Chr07:29090753..29090777 (25 bp)
AGATCAGGCAAGGAGCACCACTACC
LOC_Os07g48596
Os.52524.1.S1_at--1046--1651Chr07:29090713..29090737 (25 bp)
AGCCGAGCAGGCGACGATCGTGTTC
LOC_Os07g48596
Os.52524.1.S1_at--287--511Chr07:29090697..29090721 (25 bp)
ATCGTGTTCGGATGAACGGCGCCGC
LOC_Os07g48596
Os.52524.1.S1_at--764--2491Chr07:29090594..29090618 (25 bp)
AACATCGATCTGAATGGTGCAGGCT
LOC_Os07g48596
Os.52524.1.S1_at--6--7331Chr07:29090578..29090602 (25 bp)
GTGCAGGCTGGAGCTGAACCAACTT
LOC_Os07g48596
Os.52524.1.S1_at--958--4751Chr07:29090566..29090590 (25 bp)
GCTGAACCAACTTAACTGATCGATG
LOC_Os07g48596
Os.52524.1.S1_at--901--5151Chr07:29090509..29090533 (25 bp)
GCAACTGGGCAAGTGATTCATTTCT
LOC_Os07g48596
Os.52524.1.S1_at--391--6571Chr07:29090495..29090519 (25 bp)
GATTCATTTCTTGCTATGAGCACGA
LOC_Os07g48596
Os.52524.1.S1_at--168--8211Chr07:29090412..29090436 (25 bp)
GGAAGGTGCTTTAATTTCTCTGAAT
LOC_Os07g48596
Target Sequence 
ATGGATCGGTGGACAGCTGCCCGACCGCCTGCGACCGCGAGGGCTCGCATCACTCGCGCTCTCATGGCCACAGAGGAGAG
CAGGACATCCTGTCCATCGGCTTGCCGCCATTTGAGCCGGCAGCAGCAAGATCAGGCAAGGAGCACCACTACCTGCTGTT
CCCCAACGAGCCGAGCAGGCGACGATCGTGTTCGGATGAACGGCGCCGCGAGATGAGCACGCTGCAGGCGTCGGAGCTGG
ACCTCAGCATCAATGGCAGGTCGTCGTCCCACTCTCACAGGCGCGAAAACATCGATCTGAATGGTGCAGGCTGGAGCTGA
ACCAACTTAACTGATCGATGGAGAAAAGCAGGTAGTAGAAAATTAGCAAGCAGCAACTGGGCAAGTGATTCATTTCTTGC
TATGAGCACGATGAAATTAAGCCAAAGATGGTGGTGGTGCATCGATCGATCGCCATGTATGATCAATAAGGAAGGTGCTT
TAATTTCTCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis